PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_23087 | ||||||||
Common Name | KK1_023765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 149aa MW: 16539.6 Da PI: 9.0591 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 84.6 | 1.1e-26 | 11 | 58 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + +l+CaACgCHRnFHR+ + C.cajan_23087 11 SVYRECLRNHAASLGSYATDGCGEFTVD------GGGLQCAACGCHRNFHRKVK 58 68************************98......458**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.4E-22 | 12 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-16 | 13 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.213 | 13 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.2E-21 | 13 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.62E-15 | 65 | 134 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 68 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.7E-29 | 76 | 134 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEGGSGEKWN SVYRECLRNH AASLGSYATD GCGEFTVDGG GLQCAACGCH RNFHRKVKYP 60 AAPESPPAME YGEGSKKRVR SKFSAEQKEK MLAFAEKLGW KLQRKDLDDE IERFCRGIGV 120 SRQVFKVWMH NHKNSNSSSS TGNVSSLTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-23 | 75 | 139 | 16 | 79 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_23087 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020215953.1 | 1e-109 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 8e-40 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A151TK51 | 1e-108 | A0A151TK51_CAJCA; ZF-HD homeobox protein At4g24660 family | ||||
STRING | XP_007160565.1 | 1e-89 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7982 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-40 | homeobox protein 22 |
Publications ? help Back to Top | |||
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