PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23086
Common NameKK1_023764
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 417aa    MW: 46696 Da    PI: 9.0065
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23086genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-066587123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C++ F r  nL+ H r+H
  C.cajan_23086 65 YVCEICNQGFQRDQNLQMHRRRH 87
                   9*********************9 PP
2zf-C2H214.69.5e-05142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C+ C+k +  +s++k H++t+
  C.cajan_23086 142 WVCERCSKGYAVQSDYKAHLKTC 164
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.55E-56288No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976587IPR007087Zinc finger, C2H2
SMARTSM003550.00526587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
PROSITE patternPS01359067147IPR019786Zinc finger, PHD-type, conserved site
SMARTSM00355210106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.0E-4133163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
TEHFLLSYML VNTSSPSSVP TSEPFSCAEN GTAVSKRKRR PAGTPDPDAE VVSLSPKTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH  120
ALGDLVGIKK HFRRKHSSHK QWVCERCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDAC NVGRLGPETQ AAACLSRTAS SPSSDTNFST GGPWPGAGSA MIQKPTVITE  240
PSFTDPTIAT NTNANKLHPN LELQLSTVAP TEKRDGNHST HTQLQLLSMG ERMDKSLGER  300
VQQEAREQLR IAMAEKAFAE EARNQAKRQM ELAELEFSNA KRIRQQALAE LDKAYALKEH  360
AIKQINSTML QITCLACKHR FQSRTIPPPA PDDNSFVFTY ITTEAAQVEK HRVKINS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-18140192557Zinc finger protein JACKDAW
5b3h_F8e-18140192557Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23086
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-128AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215817.10.0zinc finger protein SHOOT GRAVITROPISM 5 isoform X1
SwissprotF4IPE31e-147IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A151TK470.0A0A151TK47_CAJCA; Zinc finger protein MAGPIE (Fragment)
STRINGGLYMA05G33590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-138C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]