PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23076
Common NameKK1_023754
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 701aa    MW: 77916.6 Da    PI: 7.1297
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23076genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.84.9e-202277156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   r++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  C.cajan_23076 22 RKRYHRHTANQIQRLESMFKECPHPDEKQRLHLSRELGLAPRQIKFWFQNRRTQMK 77
                   789999***********************************************998 PP
2START179.91.5e-562234492206
                    HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
          START   2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                    +a  a++el+++ + +ep+W +s       +++  + + +                    ++ea+r+sgvv+m++  l e+++d + +W+e ++  
  C.cajan_23076 223 IASNAMEELLRLLQTNEPLWLRSKsnaherDILSCEAYER------MfpkpnsrpknpnVRVEASRDSGVVFMNSLALAEIFMDPN-KWTELFPtf 311
                    67889*******************5555554444444444......44455559999999****************8988888888.********* PP

                    ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
          START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                       a+ ++vissg      g lqlm+ elq+lsplv+ R+f+f+Ry++q ++g+w++vdvS d +q+    ++  R++++pSg+l+++++nghskv
  C.cajan_23076 312 vsVAKRIQVISSGvmggcsGSLQLMYEELQVLSPLVStREFYFLRYCQQIEQGTWAVVDVSYDFPQDSH-FAPEFRSHRRPSGCLFQDMPNGHSKV 406
                    *9*****************************************************************99.79999********************* PP

                    EEEE-EE--SS.XXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 165 twvehvdlkgr.lphwllrslvksglaegaktwvatlqrqcek 206
                    twvehv+ +++ lph l+r l+ sg+a+ga +w+atlqr ce+
  C.cajan_23076 407 TWVEHVEIEDKtLPHRLYRNLIYSGMAFGAERWLATLQRMCER 449
                    ********876267***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-22981IPR009057Homeodomain-like
SuperFamilySSF466891.37E-191079IPR009057Homeodomain-like
PROSITE profilePS5007117.751979IPR001356Homeobox domain
SMARTSM003891.1E-182083IPR001356Homeobox domain
CDDcd000861.70E-182180No hitNo description
PfamPF000461.2E-172277IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084851.116213452IPR002913START domain
SuperFamilySSF559616.42E-37214450No hitNo description
CDDcd088757.62E-114217448No hitNo description
SMARTSM002344.5E-46222449IPR002913START domain
PfamPF018526.8E-49223449IPR002913START domain
Gene3DG3DSA:3.30.530.209.4E-10278432IPR023393START-like domain
SuperFamilySSF559613.14E-19471697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MEYGSGGGGS QSPREQDSHE RRKRYHRHTA NQIQRLESMF KECPHPDEKQ RLHLSRELGL  60
APRQIKFWFQ NRRTQMKAQH ERADNCALRA DNDKIRCENI AIREALKNVI CPSCGGPPLT  120
DDSYYDDQKL RLENAHLKEE LDRVSSIAAK YIGRPISQLP PIQPILMSSL DLSMASFGNQ  180
GMVGPGPSLN LDLLPAGTSS SVPNLPYHPP CLLDMDKSLM SDIASNAMEE LLRLLQTNEP  240
LWLRSKSNAH ERDILSCEAY ERMFPKPNSR PKNPNVRVEA SRDSGVVFMN SLALAEIFMD  300
PNKWTELFPT FVSVAKRIQV ISSGVMGGCS GSLQLMYEEL QVLSPLVSTR EFYFLRYCQQ  360
IEQGTWAVVD VSYDFPQDSH FAPEFRSHRR PSGCLFQDMP NGHSKVTWVE HVEIEDKTLP  420
HRLYRNLIYS GMAFGAERWL ATLQRMCERL TYLMVTSNPT RDNLGGVISS PVGKRSMMKL  480
AQRMVTNFCA SVSTSSGHRW TTLSGLNEIG VRVTVQNGVV LSAATTIWLP TPPHTVFNFF  540
KDERKRPQWD VLSNGDVVQE VARIANGSHP GNSISVLRGL QSSENMLILQ ESCIDSCGSL  600
VVYCPVDLAS INIAMSGEDP SHIPLLPNGF SILPDGQGEQ EGDGASTSSN SIRSGSGGSL  660
VTIALQILVS SLPSAKLNMD SVANVNNLIG SIIHQIKASF T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23076
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215888.10.0homeobox-leucine zipper protein HDG11 isoform X2
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A151TK380.0A0A151TK38_CAJCA; Homeobox-leucine zipper protein HDG11
STRINGGLYMA05G33520.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]