PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23040
Common NameKK1_023718
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 681aa    MW: 76259.1 Da    PI: 5.2731
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23040genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.2e-07122144427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                    ++C ff++ G C  GdrC F Hgp
  C.cajan_23040 122 VPCIFFQK-GLCLKGDRCAFLHGP 144
                    69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.922453IPR000571Zinc finger, CCCH-type
PfamPF156633.3E-112579No hitNo description
SMARTSM003560.00922552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6995581IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-45780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.065118145IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5118144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5119143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4122144IPR000571Zinc finger, CCCH-type
PfamPF146080.023123143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MAAQQTQTQL QPQQPTPSSQ DEALKRNTDC VYFLASPLTC KKGIECEYRH SEYARVNPRD  60
CRYWLNGNCL NPKCPFRHPP LDGLLGTQAA TAGGPSGPSV PPSQIPTASA THVPYNPSKQ  120
AVPCIFFQKG LCLKGDRCAF LHGPPTPNTG NKVAAQVPVT SQGAENPSFK KPFGSIEKHT  180
QERKNSLGNV VKSGGAPEAK LAPKVEIAPQ RNMFELEKKV PPPSAGFDNE ASRFKTDDHN  240
FHSGKDSDEF LRESSPGFDV LVADELRNSD YYHGEDEFGK ARGQDERNLD SLNEYDLGHS  300
GDYSLAADID RERFRGPQGY ESYDHMQEPY IWEQHRKAST HLDRRSRRRS DSPENVEVSD  360
LRHHLSKRRK GNGLKSVVSH DYALEGRGEE QSQRSLSRKD SLQLPLNESS LGNRFRGRIK  420
LPSDGGDDQL DREDRGRFRG RLSSGRLQVT HQGRIHDRMR GRLQDDERRI SKDRLVGREL  480
MGDRSDFAGP KSLAELKNGR NTENKDQQSL GRRRSLRDQP QSEDFDQFEG PKPLSEILKE  540
KRGAGAGAAS RNGNSSDNKN EEVTNGSDPM PVTNTQNGVL SETKEDVNNH LLNNEETKLD  600
VTDAAGGDTD ATHGQSYGDR QYDEAAEDQD YVGDDLRDVD YEFEQGDEYY EYEGDEGENP  660
EYMDEDEDAD EFAKKIGVIH S
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222561.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A151T2N30.0A0A151T2N3_CAJCA; Zinc finger CCCH domain-containing protein 17
STRINGGLYMA05G26620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137