PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_23022
Common NameKK1_023700
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 391aa    MW: 43566.2 Da    PI: 8.5932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_23022genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.4e-065779123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C++C++ F r  nL+ H r+H
  C.cajan_23022 57 YVCEICNQGFQRDQNLQMHRRRH 79
                   9*********************9 PP
2zf-C2H216.62.2e-05134156123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C +C+k +  +s++k Hi+t+
  C.cajan_23022 134 WVCDKCSKGYAVQSDYKAHIKTC 156
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-55679No hitNo description
Gene3DG3DSA:3.30.160.601.5E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035521098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-5129154No hitNo description
SMARTSM0035562134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLDNTATAAP SSSHAAFALS QNGVATSKRK RRPAGTPDPD AEVVSLSPTT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET QGQKKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCDKCS KGYAVQSDYK AHIKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACTVRQHRPE LQALQPACSS RTASSASPSS EANFSIAPPL QGLPLPKPSD QPPTTTTTVL  240
LTSEIHNNKS TTSHNLELQL LPSINSQEKR NSKENHETLA RLKEFASEEL KLAMAEKAYA  300
EEARREAKCQ IEIAELEFEN AKRIRKQAQA ELAKAEELRK QAIKKISSTV MEITCHSCKQ  360
QFQASAVGVP SEETSIVMSY MSSATTEGEA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17132182555Zinc finger protein JACKDAW
5b3h_F2e-17132182555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_23022
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-131AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580086.10.0protein SHOOT GRAVITROPISM 5 isoform X1
RefseqXP_028232544.10.0zinc finger protein SHOOT GRAVITROPISM 5-like isoform X1
SwissprotF4IPE31e-163IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A151T2M50.0A0A151T2M5_CAJCA; Zinc finger protein JACKDAW
STRINGGLYMA05G26780.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17693289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-135indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]