PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_22803 | ||||||||
Common Name | KK1_023476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24530 Da PI: 5.8359 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 63 | 110 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+r+N++f L +l + + + +K +iL A++ +++L C.cajan_22803 63 SKACREKLRRERLNERFCDLSAILEPG---RPVRTDKPAILDDAIRVLSQL 110 6778**********************8...89*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.004 | 59 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.10E-6 | 63 | 113 | No hit | No description |
Pfam | PF00010 | 1.6E-6 | 63 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-11 | 65 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-6 | 65 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-9 | 66 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDSLEDTACW DFLDYSFIDQ APPDFLWSNH SVSTEIDIPG DAVACPENTK KRGRTDSCFK 60 AGSKACREKL RRERLNERFC DLSAILEPGR PVRTDKPAIL DDAIRVLSQL KTESEELKKS 120 NEKLLEEIKC LKAEKNELRE EKLVLKADKE RIEKQLKGMA VAPAGFMAPP VAAAAAAYQA 180 GMNKMAVYPN YGYIPMWQYL PPSSRDTSHD HELRPPAA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00102 | PBM | Transfer from AT4G14410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_22803 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094668 | 0.0 | BT094668.1 Soybean clone JCVI-FLGm-5P4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020223011.1 | 1e-161 | transcription factor bHLH104 | ||||
Swissprot | Q8L467 | 5e-72 | BH104_ARATH; Transcription factor bHLH104 | ||||
TrEMBL | A0A151T1V7 | 1e-160 | A0A151T1V7_CAJCA; Transcription factor bHLH104 family | ||||
STRING | GLYMA20G22010.1 | 1e-141 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8179 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14410.2 | 1e-45 | bHLH family protein |