PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_22438

Common Name

KK1_023099

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

G2-like

Protein Properties

Length: 305aa MW: 33585.2 Da PI: 6.4358

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_22438	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.2	8.9e-34	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl C.cajan_22438 33 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 87 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.726	30	90	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-32	30	88	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.8E-24	33	88	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.06E-16	33	89	IPR009057	Homeodomain-like
Pfam	PF00249	7.7E-8	35	86	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-10	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MFSRLIHPHE PQEDMQAPPH LGDPCLVLTS DPKPRLRWTA DLHERFVDAV TQLGGASKAT 60 PKAIMRTMNV KGLTLYHLKS HLQKYRLGKQ SGKDSEEGCK DGMSASYLQE SPGTDNSSPK 120 LPASDANEGH EVKEELRKQM EVQSKLHLLV EAEKHLQIRQ DAERRYMGML ERACKMLADQ 180 FIGDIVIDAD DQKFQGMESK TSRSSLVDNV GFYPSACTEV AGMHVSEVPH ILQPQGADCS 240 TESCLTSLES LGGLTLEGSP GAGLKKRMLS LDSMAAPFIW SEANIRTQGI NLAQVNPPGI 300 TRYGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	33	89	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	33	89	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_22438

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095107	0.0	BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020222914.1	0.0	protein PHR1-LIKE 2 isoform X1
TrEMBL	A0A151T113	0.0	A0A151T113_CAJCA; Myb family transcription factor APL
STRING	GLYMA10G34050.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-64	G2-like family protein