PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_22366
Common NameKK1_023024
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TALE
Protein Properties Length: 390aa    MW: 44959 Da    PI: 6.9338
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_22366genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093173522055
                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  C.cajan_22366 317 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 352
                    5679*****************************885 PP
2ELK35.42.3e-12272293122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK +LlrKYsgyL+sLkqE+s
  C.cajan_22366 272 ELKTHLLRKYSGYLSSLKQELS 293
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.1E-19128172IPR005540KNOX1
PfamPF037901.1E-20130171IPR005540KNOX1
SMARTSM012564.3E-30179230IPR005541KNOX2
PfamPF037911.3E-24183229IPR005541KNOX2
PfamPF037893.5E-9272293IPR005539ELK domain
SMARTSM011884.8E-7272293IPR005539ELK domain
PROSITE profilePS5121311.051272292IPR005539ELK domain
PROSITE profilePS5007112.989292355IPR001356Homeobox domain
SuperFamilySSF466891.37E-19293368IPR009057Homeodomain-like
SMARTSM003892.1E-13294359IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-27297358IPR009057Homeodomain-like
CDDcd000862.99E-12304356No hitNo description
PfamPF059201.1E-16312351IPR008422Homeobox KN domain
PROSITE patternPS000270330353IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEEYTNNNNH LSENTGPRPS PRPNFLYSSS SGGNQNQNQS HHHHHHHHHQ QFPINTFHLQ  60
SGGSDHCFHE SDQVAPHPSV KTEATTSKLH APIFHYPLMR ANLHNNTMHH HHHHQGGASP  120
TSSTTEVEVI KAKIIAHPQY SNLLEAYMDC QKIGAPPEAV ARMVAAKQEF EARQRSSVGS  180
RETSKDPELD QFMEAYYDML VKYREELTRP IQEAMDFMRR IETQLNMLCN GPVRIFSDDK  240
CEGAGSSEEE DQDNSGGETE LPEIDPRAED RELKTHLLRK YSGYLSSLKQ ELSKKKKKGK  300
LPKDARQKLL NWWELHYKWP YPSESEKVAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ  360
FMVMDGLHPQ SATLYMDGHY MADGHYRLGP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_22366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070020.0HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020222834.10.0homeotic protein knotted-1 isoform X1
RefseqXP_029128578.10.0homeotic protein knotted-1 isoform X2
SwissprotO041351e-176KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A151T0Q60.0A0A151T0Q6_CAJCA; Homeobox protein knotted-1-like 2
STRINGGLYMA14G10430.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-147KNOTTED-like from Arabidopsis thaliana