PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21881
Common NameKK1_022531
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 337aa    MW: 37702.4 Da    PI: 6.7218
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21881genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.47.5e-36201322103
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.....eaesssss 81 
                    +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i++l+++            +++a ++     e+++++ +
  C.cajan_21881  20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDKLAELppwhpttheeeHNDAAGSSgilalEQQQQQRQ 115
                    79**************************************************************66665444333111111112222111111111 PP

            TCP  82 asnsssgkaaksaakskksqks 103
                    +     ++++++++ ++++q+s
  C.cajan_21881 116 Q-----QQQQQQQQRQQQEQQS 132
                    1.....1222222223333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3320132IPR005333Transcription factor, TCP
PROSITE profilePS5136931.982280IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRSSVGEIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD  60
RPSKAVDWLI KKAKTSIDKL AELPPWHPTT HEEEHNDAAG SSGILALEQQ QQQRQQQQQQ  120
QQQQRQQQEQ QSESCGYNFQ LQRQLGALIS PHVDTDPMAL FPTTSSTSSI NFQTNNSSED  180
LGLSLHCFQD HPGLIHWQQP QQAGANQTPS NEHQIQTLLA PVGFENHYQR AVNWNNEVAT  240
TDQLNRLGFM LNSQPFIGQG SASAYAQSGT LQSSFSFPMT SSEHHRSQPV NQPSIFGNRF  300
MSDGLAGYCI PDRIQGVEEN HEVASTRPPS ASPSSIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-212780154Putative transcription factor PCF6
5zkt_B2e-212780154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-124AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214649.10.0transcription factor TCP4
RefseqXP_020214650.10.0transcription factor TCP4
TrEMBLA0A151TPB20.0A0A151TPB2_CAJCA; Transcription factor TCP4
STRINGXP_007134584.11e-170(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-52TCP family protein