PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21774
Common NameKK1_022417
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 332aa    MW: 38404.9 Da    PI: 8.9799
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21774genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.66e-5481371129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + 
  C.cajan_21774   8 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIR 102
                    69****************************.99**************963433332556************************************* PP

            NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    + + +++g++ktLvfykgrap+g+ktdW+mheyrle
  C.cajan_21774 103 N-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 137
                    9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-607159IPR003441NAC domain
PROSITE profilePS5100558.0188159IPR003441NAC domain
PfamPF023654.4E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGSSNGGVPP GFRFHPTDEE LLHYYLKKKV SFQKFDMDVI REVDLNKMEP WDLQERCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSYKKIGM RKTLVFYKGR  120
APHGQKTDWI MHEYRLEEGN DPQGNANEDG WVVCRVFKKK NLFKIGNEGG GSTHNPDQQM  180
NNSSSTNARS FMHRENHYLL HQQQNPRNSS GLELDKPELA LHYPHLHHQN PQYSLFQSQP  240
LLQAQKPMVY DYSYASSLPS DTPIMAKQLM TNPRDCESGE GINEWGVLDR LVTSQLGNEE  300
SNKGVRFEEA NPHQINQLSL RGGMDFWAYG KQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-53816117167NO APICAL MERISTEM PROTEIN
1ut4_B2e-53816117167NO APICAL MERISTEM PROTEIN
1ut7_A2e-53816117167NO APICAL MERISTEM PROTEIN
1ut7_B2e-53816117167NO APICAL MERISTEM PROTEIN
3swm_A3e-53816120170NAC domain-containing protein 19
3swm_B3e-53816120170NAC domain-containing protein 19
3swm_C3e-53816120170NAC domain-containing protein 19
3swm_D3e-53816120170NAC domain-containing protein 19
3swp_A3e-53816120170NAC domain-containing protein 19
3swp_B3e-53816120170NAC domain-containing protein 19
3swp_C3e-53816120170NAC domain-containing protein 19
3swp_D3e-53816120170NAC domain-containing protein 19
4dul_A2e-53816117167NAC domain-containing protein 19
4dul_B2e-53816117167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21774
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-112AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214102.10.0protein BEARSKIN2
SwissprotQ9SV871e-146BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A151TP570.0A0A151TP57_CAJCA; NAC domain-containing protein 12
STRINGGLYMA12G00540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87523343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-149NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]