PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21724 | ||||||||
Common Name | KK1_022367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YB | ||||||||
Protein Properties | Length: 155aa MW: 17070 Da PI: 4.8206 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 43.1 | 1e-13 | 4 | 100 | 4 | 95 |
NF-YB 4 qdrflPianvsrimkkvlP...anak..iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 + ++lP a v r++k l +++ +skd e + fi ++++ a+d c++ kr+ in++d++ al + f +++ plk+ l+++r+ + C.cajan_21724 4 EAEELPRAIVRRVVKDKLSrcsEDGDisVSKDGLLAFSESARIFIHYLSATANDICKESKRQIINAEDVFKALEDTEFPEFIRPLKASLEEFRKKN 99 56789**********99962223444116788888999*******************************************************876 PP NF-YB 95 g 95 + C.cajan_21724 100 A 100 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-32 | 4 | 140 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-9 | 7 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 4.19E-24 | 8 | 123 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MAAEAEELPR AIVRRVVKDK LSRCSEDGDI SVSKDGLLAF SESARIFIHY LSATANDICK 60 ESKRQIINAE DVFKALEDTE FPEFIRPLKA SLEEFRKKNA GKKAAGSKGK EDEARKKRKL 120 EGESPGKGEG SNKGEDADKD ECSDKGEGGD DQMDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 117 | RKKNAGKKAAGSKGKEDEARKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21724 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143452 | 1e-115 | BT143452.1 Lotus japonicus clone JCVI-FLLj-16I11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214165.1 | 1e-106 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A151TP10 | 1e-105 | A0A151TP10_CAJCA; DNA polymerase epsilon subunit 3 | ||||
STRING | GLYMA11G18960.1 | 1e-82 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-41 | nuclear factor Y, subunit B11 |