PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21484
Common NameKK1_022119
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 471aa    MW: 51991.5 Da    PI: 8.9984
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21484genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-056688123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C+k F r  nL+ H r H
  C.cajan_21484 66 FICEICNKGFQRDQNLQLHRRGH 88
                   89*******************88 PP
2zf-C2H211.30.001143165123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H + +
  C.cajan_21484 143 WKCDKCSKKYAVQSDWKAHSKIC 165
                    58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-76588No hitNo description
Gene3DG3DSA:3.30.160.601.2E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.6E-56688IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8456688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035578108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.63E-7138163No hitNo description
SMARTSM00355150143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
KIMSEETFSV PPNTILLHAQ PPTSNPNHPN PNSNPPKKKR SLPGTPDPDS EVVALSPKSL  60
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK DQVRKKVYVC PEKSCVHHDP  120
SRALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  180
KDSFITHRAF CDALAEESVR ITTTTVPAAL SNIHHLTNAQ GSRIPQIFPG FHSEFGGSGA  240
FTSGTNSVPD LVQTMDMFGP QFANYRYPEA SFASANLSVL PPHGLKQEQE ENKGDLSHSA  300
SSLYLSTQNQ NPPHHMSATS LLHKAVQMGS TRMNGNNVFG SMSNNNNVVV EVHKLNELMN  360
VEGCTNLGGG GGGYILNDSS NSFVVVNSSK ALEHMVIPVD EETTASIVGK QLHSKNKTQL  420
GLTRDFLGVG ENVDSIRRPF LQQDLVEFNT MGSHSASSAM NLHSQYGGHY C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35139205369Zinc finger protein JACKDAW
5b3h_F1e-35139205369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192105KLKQRTNKDQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-154AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215199.10.0zinc finger protein BALDIBIS
TrEMBLA0A151TN590.0A0A151TN59_CAJCA; Zinc finger protein JACKDAW (Fragment)
STRINGXP_007132196.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-98C2H2-like zinc finger protein