PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21168
Common NameKK1_021797
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 1275aa    MW: 143872 Da    PI: 5.8934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21168genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS104.41.6e-322143332124
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL+ cA+avss+d   a++lL+++++++sp gd +qRla+ f++AL arla++++++y al+ ++ts    ++ ++a++++  ++P+ k++ + 
  C.cajan_21168 214 STLLILCAQAVSSDDRVTANELLKQIRQHSSPLGDGTQRLAHSFANALDARLAGTGTQIYTALSNKKTS---AADMVKAYQMYISACPFKKLAIIF 306
                    579************************************************************999999...99********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQ 124
                    aN++Il  +++ e++HiiDf+i +G+Q
  C.cajan_21168 307 ANHTILHLAKEVETLHIIDFGIRYGFQ 333
                    *************************99 PP
2GRAS177.11.3e-54335521155342
           GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                    ke+++etg rLa+++++++vpfefn+ +a+++e+++le+L++k++E laVn +++ ++llde+v ++s+rd+vL+l+++ +P++++++  + ++n+
  C.cajan_21168 335 KERVQETGLRLARYCDRFNVPFEFNA-IAQKWETIKLEDLKIKENELLAVNAMFRFQNLLDETVVSNSPRDTVLNLIRKANPNIFIHATVNGSYNA 429
                    789***********************.7******************************************************************** PP

           GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                    + F++rf eal +ys+lfd l+++ +re+  r + E+e++gr+++n++aceg er+er et+++W+ r ++aGF+++pl+++  ++ ++  +
  C.cajan_21168 430 PFFVTRFREALFHYSTLFDVLDTNTAREDPMRLMFEKEFFGRRVMNIIACEGCERVERPETYKQWQVRHMRAGFRQLPLDQQLINKLRCKSK 521
                    *********************************************************************************99988887665 PP
3GRAS214.36.5e-6697911991219
           GRAS    1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94  
                     l++lLl  A+ v ++d++ a+++L+++++ +sp+gd+ qRla+yf+++L+arl + +++    ++  ++++ + +e l+a+++f  ++P+ kf+
  C.cajan_21168  979 LRNLLLMSAQSVYANDFRTANEYLKKVRQYSSPTGDASQRLAHYFANGLEARLIGGGTTALGFFSLLSSKKVTAAEFLKAYQIFLSTTPFTKFT 1072
                     6899***************************************************999999999999999999********************* PP

           GRAS   95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 
                     ++ aN++I ea++++e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg+rLa+++++ +vpfe+++++++++
  C.cajan_21168 1073 YFFANKMIGEAAAKAETVHIIDFGILHGFQWPILIKFLSKREGGPPKLRITGIEFPQPGfrPTEKIEETGRRLANYCKRYNVPFEYHAIASRSW 1166
                     **********************************************************9*****************************9999** PP

           GRAS  187 edleleeLrvkpgEalaVnlvlqlhrlldesvs 219 
                     e++++e+L+++++E++aVn+ l+ ++lldes++
  C.cajan_21168 1167 ETIQVEALKIERNEVVAVNCYLRFENLLDESTD 1199
                     ****************************99876 PP
4GRAS43.64.8e-1412041272304373
           GRAS  304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                      r++r et+++W+ r++++GFk++pl+++ +++ ++ lr+++ d + ++e+++++++gWk+r   + ++W
  C.cajan_21168 1204 PRNARPETYKQWQVRITRVGFKQLPLNKELMAKFRTKLREYHRD-FVLDEDNNWMLQGWKGRIFNASTCW 1272
                     5899**************************************66.**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.424187533IPR005202Transcription factor GRAS
PfamPF035145.4E-30214333IPR005202Transcription factor GRAS
PfamPF035144.6E-52335521IPR005202Transcription factor GRAS
PROSITE profilePS5098543.689531275IPR005202Transcription factor GRAS
PfamPF035142.3E-639791199IPR005202Transcription factor GRAS
PfamPF035141.7E-1112041272IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 1275 aa     Download sequence    Send to blast
MLMEEDLEEK PCMFNDSLAL QAAEKSFYDV IGETYPSYSS SIQNSQDSPD ESSSISGSTT  60
LFSKSESVLQ FERGVEEANK FLPKGNPLVI DLENPSFVKV PPRTVEIKAE RDEISPESRG  120
RKNHEREDGE AELQDGRSNK QSAVYTDDDS ELSELLDKIL LGARWGNEPA PLCICFADLP  180
NGPSLGKLEE AKKSDGGKSR VKKQSNKKGV VDLSTLLILC AQAVSSDDRV TANELLKQIR  240
QHSSPLGDGT QRLAHSFANA LDARLAGTGT QIYTALSNKK TSAADMVKAY QMYISACPFK  300
KLAIIFANHT ILHLAKEVET LHIIDFGIRY GFQPKERVQE TGLRLARYCD RFNVPFEFNA  360
IAQKWETIKL EDLKIKENEL LAVNAMFRFQ NLLDETVVSN SPRDTVLNLI RKANPNIFIH  420
ATVNGSYNAP FFVTRFREAL FHYSTLFDVL DTNTAREDPM RLMFEKEFFG RRVMNIIACE  480
GCERVERPET YKQWQVRHMR AGFRQLPLDQ QLINKLRCKS KETGKFINQI LMEENVQQRP  540
FYDSLSLQLT EKSFYHALTG TLPLSPHQHP LVHSPETETT NTSSSSNSNN GDNFFSDENS  600
REFKPPSPSP DSVSVSVSAF QFNPHALSQP PSLTVADRLS DLDSSIAKLL AQNIFSDVDS  660
VSQFRRGLEE ASKFLPPGPN LVTPLGSKGE QSNNTLGDDS YGLKLKVLFT VTMEANFPFG  720
EEEKDESILY VSDSLGFAAT DLSLEDKDND FSETAKFISQ ILMEENVEHR PFYDSFSLQV  780
TEKSFYHALI GNLPHSPNQH SLVLSPEPEI TTTTSKNNFL DQNSNLDSSI AKLLAHNIFN  840
DADSISQFRR GMEEASKFLP PGPNLVTALD SKGEQPINTF EQNSYGLKGR KNHKRPDIQI  900
REEEDDDDEE GRSNKQSALS LADENDLSDA IDRVFVCVEN VCNEDITLHN GATKVKEPDG  960
GGKKGRPKKH GRKKETVDLR NLLLMSAQSV YANDFRTANE YLKKVRQYSS PTGDASQRLA  1020
HYFANGLEAR LIGGGTTALG FFSLLSSKKV TAAEFLKAYQ IFLSTTPFTK FTYFFANKMI  1080
GEAAAKAETV HIIDFGILHG FQWPILIKFL SKREGGPPKL RITGIEFPQP GFRPTEKIEE  1140
TGRRLANYCK RYNVPFEYHA IASRSWETIQ VEALKIERNE VVAVNCYLRF ENLLDESTDE  1200
LDSPRNARPE TYKQWQVRIT RVGFKQLPLN KELMAKFRTK LREYHRDFVL DEDNNWMLQG  1260
WKGRIFNAST CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-3419611851333Protein SCARECROW
5b3h_D2e-3419611851333Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214651.10.0scarecrow-like protein 14 isoform X1
RefseqXP_020214652.10.0scarecrow-like protein 14 isoform X2
SwissprotQ9XE581e-174SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A151TMC60.0A0A151TMC6_CAJCA; Scarecrow-like protein 14
STRINGGLYMA11G14750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-169SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]