PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21167 | ||||||||
Common Name | KK1_021795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GRAS | ||||||||
Protein Properties | Length: 143aa MW: 17321.8 Da PI: 5.8332 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 129.7 | 3.3e-40 | 1 | 140 | 234 | 373 |
GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 ++P++++ + + + n++ F +rf eal +y +l+d+ +a +pre+e+r+ +Ere++gre++nv+aceg+er+er et++kW r ++aGFk++pl C.cajan_21167 1 IKPDIFTQTVINGSFNAPFFTTRFREALFHYYTLYDMCDAVVPRENEWRMLIEREIVGREAMNVIACEGSERIERPETYKKWYIRNTRAGFKQLPL 96 69********************************************************************************************** PP GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +e+ +++ ++ lr+ + + + v+e+++++++gWk+r L++ S+W C.cajan_21167 97 NEELMEKCRSQLREWYHRDFFVDEDNEWMLQGWKGRVLYASSCW 140 ****************999************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 1.1E-37 | 1 | 140 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 23.549 | 1 | 121 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
IKPDIFTQTV INGSFNAPFF TTRFREALFH YYTLYDMCDA VVPRENEWRM LIEREIVGRE 60 AMNVIACEGS ERIERPETYK KWYIRNTRAG FKQLPLNEEL MEKCRSQLRE WYHRDFFVDE 120 DNEWMLQGWK GRVLYASSCW VPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21167 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214790.1 | 1e-101 | scarecrow-like protein 33 isoform X1 | ||||
Refseq | XP_029127111.1 | 1e-101 | scarecrow-like protein 33 isoform X2 | ||||
Swissprot | P0C884 | 3e-61 | SCL34_ARATH; Scarecrow-like protein 34 | ||||
TrEMBL | A0A151TMA0 | 1e-100 | A0A151TMA0_CAJCA; Scarecrow-like protein 33 (Fragment) | ||||
TrEMBL | A0A151TME3 | 1e-103 | A0A151TME3_CAJCA; Scarecrow-like protein 34 (Fragment) | ||||
STRING | GLYMA11G14720.2 | 5e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14801 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29065.1 | 1e-63 | GRAS family protein |