PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_21165 | ||||||||
Common Name | KK1_021794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GRAS | ||||||||
Protein Properties | Length: 595aa MW: 67661 Da PI: 6.3393 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 379.4 | 4.4e-116 | 227 | 592 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL++cA+av+s d++ a+++L+++++++sp gd +qRla+yf+ +L++rla ++ k + +++s ++ l+a++++ +sP++++s+++a C.cajan_21165 227 TLLTQCAQAVASYDQRTANEILKQIRQNSSPFGDGLQRLAHYFADGLETRLAA---GTPKFILFQSAS---AADMLKAYRVYITASPFHRMSNFLA 316 69**************************************************9...555555555555...899********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N++Il+ +++e+ +HiiDf+is+G+QWp+L++ L++R++gpp+lRiTg++ p++g +e++eetg+rL+k+++++gvpfe+n +a+++e+++le C.cajan_21165 317 NRTILKLAQNESSLHIIDFGISYGFQWPCLIHRLSEREGGPPKLRITGIDLPQPGfrPAERVEETGRRLEKYCQRFGVPFEYNC-LAQKWETIRLE 411 ******************************************************9*****************************.6********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L++++ E+++Vn+ ++l++l de+v+ + +rd++L+l+++++P+++ + + +n++ Fl+rf eal ++salfd++ea++pre+ r + E+ C.cajan_21165 412 DLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGVVNGTYNAPFFLTRFREALFHFSALFDMFEANVPREDPSRLMFEKG 507 ************************************************************************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l+gr++ nv+acegaer+er et+++W+ r ++aGFk++pl + ++ +k +++k + + + v+e+ +++++gWk+r L+++++W C.cajan_21165 508 LFGRDAINVIACEGAERFERPETYKQWQVRNQRAGFKQLPLAPDLVNRVKEMVKKEYHKDFVVDEDGKWVLQGWKGRILFATTSW 592 *********************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.758 | 199 | 573 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-113 | 227 | 592 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MEEEDDLERK PCMLQDCLRL QAAEKSFYDA LVQSHPSSPH EFRDDNPDPD DNFAGSGTTS 60 SESYSSYTTD NSCDSDWFNG SGDFEASFLQ RSLIDPFRET QAVVHLSNGA WNTIQSRNMP 120 RVFEEGVMHG SMTARGSREK RSHLMNDISH EEEERSTKLS AVSSDDSEPS SLFDEVLLCK 180 DGKSPAIFYA DREPSSAQIA DSGAKTTRSK KGSNKGTRAS TTVDLWTLLT QCAQAVASYD 240 QRTANEILKQ IRQNSSPFGD GLQRLAHYFA DGLETRLAAG TPKFILFQSA SAADMLKAYR 300 VYITASPFHR MSNFLANRTI LKLAQNESSL HIIDFGISYG FQWPCLIHRL SEREGGPPKL 360 RITGIDLPQP GFRPAERVEE TGRRLEKYCQ RFGVPFEYNC LAQKWETIRL EDLKIDRSEV 420 TVVNCLYRLK NLSDETVTAN CPRDALLRLI RRINPNIFMH GVVNGTYNAP FFLTRFREAL 480 FHFSALFDMF EANVPREDPS RLMFEKGLFG RDAINVIACE GAERFERPET YKQWQVRNQR 540 AGFKQLPLAP DLVNRVKEMV KKEYHKDFVV DEDGKWVLQG WKGRILFATT SWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-51 | 231 | 594 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-51 | 231 | 594 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-51 | 231 | 594 | 24 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_21165 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214197.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-180 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A151TM79 | 0.0 | A0A151TM79_CAJCA; Scarecrow-like protein 14 | ||||
STRING | GLYMA12G06630.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-174 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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