PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21058
Common NameKK1_021687
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 425aa    MW: 46516.9 Da    PI: 5.7386
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21058genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3759.9e-115634223374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y  l++++ + ++s++ ++a++ ++ vsP++kfsh+ta
  C.cajan_21058  63 GLLLQCAECVAMDKLDFANDLLPEIAELSSPFGSSPERVGAYFAQALQARVVSSCLSSYLPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTA 158
                    58***************************************************999999999999999999************************* PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    NqaI +a++ge+rvHiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef+++  k  +  e+++L
  C.cajan_21058 159 NQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPVEGKIGSVTEVSQL 250
                    ***************************************************....9**************************8777777779**** PP

           GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                     v+p+Ea++V+++   h l+d ++s       +L+l+ +l Pk+++ veq+++h ++sFl rf+eal+yysalfd+l  +l++es er++vE++ll
  C.cajan_21058 251 GVQPNEAIVVHWMQ--HCLYDITGSDLA----TLRLLTQLHPKLITTVEQDLSH-AGSFLSRFVEALHYYSALFDALGDGLGAESLERHTVEQQLL 339
                    ************99..777766666666....9*********************.899************************************** PP

           GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    g ei+n+va  g +r+ + + +e+W + l++aGF++v+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+ +SaW+
  C.cajan_21058 340 GCEIRNIVAVGGPKRTGEVQ-VERWADELKRAGFRAVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQ 422
                    **************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.12635402IPR005202Transcription factor GRAS
PfamPF035143.4E-11263422IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MLQSLVPGTP NPNAMKTKRA DADSPAHQPP FKRAAEVEPD PEEEQAFDPE PHGGESTGLK  60
LLGLLLQCAE CVAMDKLDFA NDLLPEIAEL SSPFGSSPER VGAYFAQALQ ARVVSSCLSS  120
YLPLTAKSVT LTQSQRIFNA FQSYNSVSPL VKFSHFTANQ AIFQALDGED RVHIIDLDIM  180
QGLQWPGLFH ILASRSKKIR SMRITGFGSS SELLESTGRR LADFASSLGL PFEFHPVEGK  240
IGSVTEVSQL GVQPNEAIVV HWMQHCLYDI TGSDLATLRL LTQLHPKLIT TVEQDLSHAG  300
SFLSRFVEAL HYYSALFDAL GDGLGAESLE RHTVEQQLLG CEIRNIVAVG GPKRTGEVQV  360
ERWADELKRA GFRAVSLRGN PAAQASLLLG MFPWRGYTLV EENGSLKLGW KDLSLLIASA  420
WQPSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1606742325380Protein SCARECROW
5b3h_A1e-1606742324379Protein SCARECROW
5b3h_D1e-1606742324379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21058
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214405.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A151TM140.0A0A151TM14_CAJCA; Scarecrow-like protein 23
STRINGGLYMA11G10220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]