PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_21052
Common NameKK1_021681
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 433aa    MW: 49098.8 Da    PI: 6.5155
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_21052genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.25.6e-137464301374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lLl+cA++v++g+le+a+++L+++s laspdgd+mqR+a yf+e La r++++++++ +al++++ +    see+ ++k f+e++P+lk++++
  C.cajan_21052  46 LIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIAVYFMESLADRILKTWPGIHRALNSTRMT--MLSEEILVQKHFFELFPFLKVAFV 139
                    689*************************************************************999988..69********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    ++NqaI+ea+ege+++HiiD+++ + +QW+aLlq L++Rpegpp+lRiTgv++    +ke l ++++rL++ Ae+l++pf+fn+ v+++le+l+++
  C.cajan_21052 140 LTNQAIVEAMEGEKMIHIIDLNAAEAAQWIALLQVLSARPEGPPHLRITGVHQ----KKEILDQVAHRLTEEAEKLDIPFQFNP-VVSKLENLDFD 230
                    *****************************************************....9**************************.799******** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrll.....................desvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                    +Lrvk+gEala++++lqlh+ll                     +      +    +++L+++++lsPkv+vv+eq+++hn++++++r+leal+ y+
  C.cajan_21052 231 KLRVKTGEALAISSILQLHSLLawddeamqrksphllktsltaS------NsmSMETFLNALWGLSPKVMVVTEQDSNHNGPTLMDRLLEALYSYA 320
                    *************************************7644222......2235678*************************************** PP

           GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                    alfd+le++++r+s er  vE++l+g+ei+n++aceg+er+erhe+l kW +r++ aGF++vpls++   qa++ +   +  +gyr+ +e+g++++
  C.cajan_21052 321 ALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGSERKERHEKLDKWFQRFDVAGFGNVPLSYFGILQARRRVLLSYgCEGYRMRDENGCVLI 416
                    ************************************************************************998887777*************** PP

           GRAS 361 gWkdrpLvsvSaWr 374
                    +W+drp++s+SaWr
  C.cajan_21052 417 CWQDRPMFSISAWR 430
                    *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.31620409IPR005202Transcription factor GRAS
PfamPF035141.9E-13446430IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLQEGSSSVN SSPLKLFSMM SLSPSLGSPN NLLLREMKSE ERGLYLIHLL LTCANHVAAG  60
NLENANTTLE QISLLASPDG DTMQRIAVYF MESLADRILK TWPGIHRALN STRMTMLSEE  120
ILVQKHFFEL FPFLKVAFVL TNQAIVEAME GEKMIHIIDL NAAEAAQWIA LLQVLSARPE  180
GPPHLRITGV HQKKEILDQV AHRLTEEAEK LDIPFQFNPV VSKLENLDFD KLRVKTGEAL  240
AISSILQLHS LLAWDDEAMQ RKSPHLLKTS LTASNSMSME TFLNALWGLS PKVMVVTEQD  300
SNHNGPTLMD RLLEALYSYA ALFDCLESTV SRTSLERLRV EKMLFGEEIK NIIACEGSER  360
KERHEKLDKW FQRFDVAGFG NVPLSYFGIL QARRRVLLSY GCEGYRMRDE NGCVLICWQD  420
RPMFSISAWR SRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-71284321381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_21052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214051.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A151TLX30.0A0A151TLX3_CAJCA; Scarecrow-like protein 3
STRINGGLYMA11G10170.30.0(Glycine max)
STRINGXP_007131568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]