PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_20921 | ||||||||
Common Name | KK1_021548 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 257aa MW: 29029.6 Da PI: 10.2636 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00092 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +Cgk F ++ L H +H C.cajan_20921 153 FKCDKCGKIFQSHQALGGHKANH 175 89*********999998888877 PP | |||||||
2 | zf-C2H2 | 17.7 | 1e-05 | 204 | 226 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+F++ L H ++H C.cajan_20921 204 FECPYCSKVFKSARALGGHKKVH 226 89**************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 5.8E-9 | 153 | 177 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.31E-11 | 153 | 226 | No hit | No description |
SMART | SM00355 | 0.066 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 200 | 226 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-8 | 203 | 226 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0019 | 204 | 226 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.824 | 204 | 231 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 206 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGGHMRSHFA KLPIPPKPET KNQALDNSAE LTYRPNQSAS SQTSQSQKKP AQNFRSLKRS 60 LFSFSTNTNR ENEFRPYPKN PTRKRSKCHR KFIAAIEMKA DSEQVTPKPD SLFAEEAARS 120 LLMLSKDKWP ESKEIKNQEV KEIRAKDKED ANFKCDKCGK IFQSHQALGG HKANHKKNEN 180 TWQGGDPDND GTSKKSDDVG EKVFECPYCS KVFKSARALG GHKKVHFSYN KANAQSSANQ 240 FGRKLVVDLN FPAPIED |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_20921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020214422.1 | 1e-116 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A151TLK2 | 0.0 | A0A151TLK2_CAJCA; Zinc finger protein 1 | ||||
STRING | GLYMA09G36450.2 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15389 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-30 | C2H2-like zinc finger protein |