PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_20893
Common NameKK1_021520
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23002.9 Da    PI: 9.5741
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_20893genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.99.9e-27958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien+  rqvtf+kRr+g+lKKA+ELSvLCdae+ ++ifs +gklye +
  C.cajan_20893  9 KRIENSVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELA 58
                   79*********************************************965 PP
2K-box66.68.4e-23841721199
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    ea+    ++e +kLk+ei++Lq+ +R l G + +++++ eLq Le++Le  + +iRs K++++l++i+ l+ ke  l+ +nk+L+ k+ 
  C.cajan_20893  84 EAHPLDAKEETNKLKQEIQTLQKGIRYLFGGGNKTMTIDELQILEKNLEMWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLQDKIV 172
                    666677899*****************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.305161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-28176IPR002100Transcription factor, MADS-box
CDDcd002654.66E-41274No hitNo description
PRINTSPR004044.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.56287177IPR002487Transcription factor, K-box
PfamPF014869.4E-2390171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MARGKVQLKR IENSVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLVIFSA HGKLYELATK  60
GTMQGLIERY MKFTPGAQPE AAPEAHPLDA KEETNKLKQE IQTLQKGIRY LFGGGNKTMT  120
IDELQILEKN LEMWIYHIRS MKMNIMLQEI QALKDKEGTL KAANKYLQDK IVENTVVYNV  180
APYATDTPYP LIIQDEVFRL Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16182178MEF2 CHIMERA
6byy_B1e-16182178MEF2 CHIMERA
6byy_C1e-16182178MEF2 CHIMERA
6byy_D1e-16182178MEF2 CHIMERA
6bz1_A1e-16182178MEF2 CHIMERA
6bz1_B1e-16182178MEF2 CHIMERA
6bz1_C1e-16182178MEF2 CHIMERA
6bz1_D1e-16182178MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_20893
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991420.0BT099142.1 Soybean clone JCVI-FLGm-16J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020215268.11e-148agamous-like MADS-box protein AGL12
SwissprotA2YQK95e-76MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G85e-76MAD26_ORYSJ; MADS-box transcription factor 26
SwissprotQ388414e-76AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A151TLJ41e-147A0A151TLJ4_CAJCA; MADS-box transcription factor 26
STRINGGLYMA12G00770.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-78AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  3. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  4. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]
  5. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  6. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]