PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_20569 | ||||||||
Common Name | KK1_021184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 334aa MW: 35549.1 Da PI: 10.4321 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.7 | 3.6e-37 | 55 | 160 | 2 | 109 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + +s ++ +++++ C.cajan_20569 55 TQKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLKIPT--PSPSNPDPEDPP 148 6799************************************************************888885552222222222..222233333332 PP TCP 97 skksqksaasaln 109 ++k++k++a +++ C.cajan_20569 149 ERKKRKRPA-NSA 160 222222222.122 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-31 | 60 | 173 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 61 | 115 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MADEASRDVD LRLGEPKGPK QEPDTEEASG SAIRVMPVAV HVPAGMSKAL AQAQTQKRAS 60 TKDRHTKVEG RGRRIRMPAT CAARIFQLTR ELGHKSDGET IRWLLEHAEP AIIAATGTGT 120 VPAIAMSVNG TLKIPTPSPS NPDPEDPPER KKRKRPANSA YVDVNDAAVS LSAGLATSNN 180 QHATTTTTTT TSVPQHNVIP LPQGMVPVWA IPSNAVVPTA GAFFVVPQTP SFQHQPQFFT 240 IARPISAFVS SMVTPIQLQS TSTSSTIDNS NTSSTAPSSK SPARAAVMTP ATASATTTTT 300 TATTTTTTQM LRDFSLKIYD KQELQFMSRA SSKH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 155 | ERKKRKRP |
2 | 149 | 154 | RKKRKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00638 | PBM | Transfer from Lj0g3v0004489 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_20569 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213077.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 7e-87 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A151UCI0 | 0.0 | A0A151UCI0_CAJCA; Transcription factor TCP9 | ||||
STRING | GLYMA03G02090.1 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 4e-77 | TCP family protein |