PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_20250

Common Name

Dof28

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 376aa MW: 40678.4 Da PI: 8.5451

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_20250	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	38	98	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss C.cajan_20250 38 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSS 98 78999*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	36	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-32	39	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MENPKTSSAE TETSLLKSPT NGEQSESSAS EEKTPKKPDK VLPCPRCNSM DTKFCYYNNY 60 NVNQPRHFCK SCQRYWTAGG TMRNVPVGAG RRKNKNSSMT TSHYRHMMVP EALQGATLNA 120 PNGLHNSVLT FGPDSPLCDS VASVLNIAER AQGCVVPKGF HHATEPNSFV TYSKEGGNSN 180 GVSVATTSTS GHSGSHETVE RRGEGLTPQL SFFPSSPWPY PLNSSMPPPT FCPPGYPLSF 240 YTAPAYWGCM QPSWNISCIS PQSSVDNSVT VSTPTLGKHT RDGNIIATSN SQKIDHKSSE 300 HNVLVPKTLR IDDPSEAARS SMWSKLGSKN DKGSSGGLFK PFPSKGGDMN HMVEASPVLQ 360 ANPAALSRSL TFHEQT

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MENPKTSSAE TETSLLKSPT NGEQSESSAS EEKTPKKPDK VLPCPRCNSM DTKFCYYNNY  60
NVNQPRHFCK SCQRYWTAGG TMRNVPVGAG RRKNKNSSMT TSHYRHMMVP EALQGATLNA  120
PNGLHNSVLT FGPDSPLCDS VASVLNIAER AQGCVVPKGF HHATEPNSFV TYSKEGGNSN  180
GVSVATTSTS GHSGSHETVE RRGEGLTPQL SFFPSSPWPY PLNSSMPPPT FCPPGYPLSF  240
YTAPAYWGCM QPSWNISCIS PQSSVDNSVT VSTPTLGKHT RDGNIIATSN SQKIDHKSSE  300
HNVLVPKTLR IDDPSEAARS SMWSKLGSKN DKGSSGGLFK PFPSKGGDMN HMVEASPVLQ  360
ANPAALSRSL TFHEQT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_20250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020210896.1	0.0	cyclic dof factor 3
TrEMBL	A0A0K8K5V3	0.0	A0A0K8K5V3_CAJCA; Dof protein
STRING	XP_007158648.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-80	cycling DOF factor 2

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]