PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_20239
Common NameKK1_020840
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 358aa    MW: 40441.6 Da    PI: 8.5858
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_20239genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-20953145
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                   kr en+  rq t++kR+ngi+KKA ELS+LCd+++ +++f+++gk
  C.cajan_20239  9 KRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGK 53
                   689****************************************97 PP
2K-box13.92.3e-061101821783
          K-box  17 lqqelakLkkeienLq.....reqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                    ++q ++ L ++ + Lq     + +R   +++ +++s +++L q+e+ L +sl++iR++K+++ ++q+  +q  
  C.cajan_20239 110 SSQTIEDLSNQARLLQtqiseTHKRLSHWNEFDKISsVEQLGQMENSLRESLNQIRTRKENIKKQQLVSMQCN 182
                    4566666777777777666534445567999999963678**********************99999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-26160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.507153IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-24295IPR002100Transcription factor, MADS-box
CDDcd001201.24E-23254No hitNo description
PRINTSPR004042.1E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-171154IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-163859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.523107204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAELSILCD IDIILLMFAP NGKPSLCRGR  60
RSNLDEVIAK FAQLTPQERA KRKLETLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLSNQ  120
ARLLQTQISE THKRLSHWNE FDKISSVEQL GQMENSLRES LNQIRTRKEN IKKQQLVSMQ  180
CNNQFNDMNI PFRMSSEQHL QPLSWIANGD SQNIVLPEDS NMFLHKDVEG SASSSFGSYA  240
SYLGSSIKTE MSNSAQENGV LSDLSSTAPM RLQLNGQFPY LPYNFNLLNN LKFQPTAEIN  300
PHENPVDYHV NGSFDAPRSG YDSNHHGWAS SSGPCAVTMF DEQLYAQASP TKVNFGFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-13192190MEF2 CHIMERA
6byy_B1e-13192190MEF2 CHIMERA
6byy_C1e-13192190MEF2 CHIMERA
6byy_D1e-13192190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_20239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220789.10.0agamous-like MADS-box protein AGL30 isoform X3
RefseqXP_029127200.10.0agamous-like MADS-box protein AGL30 isoform X1
RefseqXP_029127202.10.0agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA41e-108AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A151UBD70.0A0A151UBD7_CAJCA; MADS-box transcription factor 1
STRINGXP_007158646.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27503370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.23e-85AGAMOUS-like 30
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]