PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_20131 | ||||||||
Common Name | KK1_020730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | CO-like | ||||||||
Protein Properties | Length: 365aa MW: 39953.1 Da PI: 5.8687 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1e-05 | 13 | 53 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40 +r+C+++ + fC+ + +lC+ C H + H++v C.cajan_20131 13 PRTCDTCRAAASTVFCRAHSFFLCAACDARLHASpswHERV 53 589******99*********************878888865 PP | |||||||
2 | zf-B_box | 28.6 | 2.9e-09 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC +C +H+ H +vp+ C.cajan_20131 53 VWVCEACERAPAAFLCKADAASLCSSCDADIHSAnplagrHHRVPI 98 689*****************************66899999877775 PP | |||||||
3 | CCT | 70.4 | 4.4e-24 | 296 | 339 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ C.cajan_20131 296 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 339 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.9 | 11 | 48 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.27E-4 | 14 | 55 | No hit | No description |
PROSITE profile | PS50119 | 9.343 | 16 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.7E-13 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.808 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-7 | 52 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.27E-8 | 54 | 98 | No hit | No description |
Pfam | PF06203 | 7.0E-18 | 296 | 338 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.648 | 296 | 338 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MLEGGEPAAT WAPRTCDTCR AAASTVFCRA HSFFLCAACD ARLHASPSWH ERVWVCEACE 60 RAPAAFLCKA DAASLCSSCD ADIHSANPLA GRHHRVPILP ISSSSSAAAA PHHHDDDDDA 120 DADADDDDET ASWLLLNPLK SATVPNNNDS NNNNGFLYGG EVDEYLDLVD NCNSCGDNSN 180 HFTAATTTTD DYAQHQHFDG VSHHKSYAGD SVVPVQQHHH FQLSLEFDNN NNNKASFGFN 240 ASVSQSVSVS SMDVGVVPES TMMDVSIGHS RPPKGTIDLF SGPSIQMPSH LTPMDREARV 300 LRYREKKKTR KFEKTIRYAS RKAYAETRPR IKGRFAKRTD VEAEVDQMFS TTLITEVGYG 360 IVPSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Does not affect flowering time. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_20131 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020210873.1 | 0.0 | zinc finger protein CONSTANS-LIKE 2 | ||||
Swissprot | Q96502 | 1e-122 | COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2 | ||||
TrEMBL | A0A151UAZ1 | 0.0 | A0A151UAZ1_CAJCA; Zinc finger protein CONSTANS-LIKE 2 | ||||
STRING | XP_007139358.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02380.1 | 1e-78 | CONSTANS-like 2 |
Publications ? help Back to Top | |||
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