PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19966
Common NameKK1_020554
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NAC
Protein Properties Length: 323aa    MW: 36556.1 Da    PI: 6.7937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19966genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1064.6e-33662061128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                    lp G++F+P+d+e++ e+L++kv ++       ++  e   +++   +i++++P++Lp  v ++ +  +fF++ +k+y+tg+rk+r+++      +
  C.cajan_19966  66 LPSGVKFDPNDQEIL-EHLEAKVLSDMpklhplID--EfipTLEGEnGICYTHPEKLP-GVGKDGQIRHFFHRPSKAYTTGTRKRRKVHtdeegsE 157
                    699***********9.99****9999856643322..22222333336**********.566666777******************7444465557 PP

            NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                     +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  C.cajan_19966 158 TRWHKTGKTRPVFV-GGAVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 206
                    78************.9*************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3761225IPR003441NAC domain
PROSITE profilePS5100533.38866225IPR003441NAC domain
PfamPF023658.4E-1567206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTWCNESDEE RGIGVVTPTI TPTTTNNTLV SVTDPKPTEI RTINCPSCGH NIEFQDQSGI  60
NELPGLPSGV KFDPNDQEIL EHLEAKVLSD MPKLHPLIDE FIPTLEGENG ICYTHPEKLP  120
GVGKDGQIRH FFHRPSKAYT TGTRKRRKVH TDEEGSETRW HKTGKTRPVF VGGAVKGFKK  180
ILVLYTNYGR QKKPEKTNWV MHQYHLGSNE EEKDGELVVS KVFYQTQPRQ CGNSSITKQD  240
PYDEERLTNP SVVHDQDNII IPKNNAALMD YYNNPFLNYE HVGGRNNNME TSPQLIPNLV  300
VQGDTSSFIR LAMDATKARL DRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19966
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-177AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020214029.10.0NAC domain-containing protein 73
SwissprotO494591e-119NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A151UAH10.0A0A151UAH1_CAJCA; NAC domain-containing protein 8
STRINGGLYMA07G32250.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]