PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_19952

Common Name

Dof15, Dof27, KK1_020540

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

Dof

Protein Properties

Length: 282aa MW: 30370.8 Da PI: 10.6557

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_19952	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	26	85	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++++kcprCds+ntkfCy+nnyslsqPr+fCk+C+ryWt+GG++rn+PvGgg+rk k++ C.cajan_19952 26 PQQQQKCPRCDSMNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKGKRA 85 68999***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.5E-32	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.332	30	84	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-22	31	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEQEGERREE NRQQVQRAAQ QQQQPPQQQQ KCPRCDSMNT KFCYFNNYSL SQPRHFCKTC 60 KRYWTHGGTF RNIPVGGGSR KGKRARTSAF SNALSLTQAQ PNLLRPSPSP PTMLHSASSF 120 YQLAGAGVGV GVGVGGSGFL SSLATLHSLN SSRPFNHHYL KVGVAGDVAG SSSNSSLLSG 180 FNAASNSLPP RFHHMGRVES LYPTQQRLVI PSNVGASATG SHTTQLPQSL IVSNNNATNA 240 SLWSTTTITA NGNNSDQNNV KAGGSSLIPN HWLHLPGYAP PQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_19952

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662918	0.0	KP662918.1 Cajanus cajan Dof27 (Dof27) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020217878.1	0.0	uncharacterized protein LOC109801261
Refseq	XP_020220033.1	0.0	dof zinc finger protein DOF2.2
TrEMBL	A0A0K8K646	0.0	A0A0K8K646_CAJCA; Dof protein
STRING	GLYMA07G31860.2	1e-97	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-30	OBF-binding protein 3

Publications ? help Back to Top
Malviya N, et al. Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.). Mol. Biol. Rep., 2015. 42(2): p. 535-52 [PMID:25344821]