PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_19939 | ||||||||
Common Name | Dof15, Dof27, KK1_020540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Dof | ||||||||
Protein Properties | Length: 245aa MW: 25906.9 Da PI: 11.0271 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 99.2 | 2.7e-31 | 1 | 48 | 14 | 61 |
zf-Dof 14 tntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ntkfCy+nnyslsqPr+fCk+C+ryWt+GG++rn+PvGgg+rk k++ C.cajan_19939 1 MNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGGSRKGKRA 48 69******************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.1E-26 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 24.26 | 1 | 47 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-18 | 2 | 47 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MNTKFCYFNN YSLSQPRHFC KTCKRYWTHG GTFRNIPVGG GSRKGKRART SAFSNALSLT 60 QAQPNLLRPS PSPPTMLHSA SSFYQLAGAG VGVGVGVGGS GFLSSLATLH SLNSSRPFNH 120 HYLKVGVAGD VAGSSSNSSL LSGFNAASNS LPPRFHHMGR VESLYPTQQR LVIPSNVGAS 180 ATGSHTTQLP QSLIVSNNNA TNASLWSTTT ITANGNNSDQ NNVKAGGSSL IPNHWLHLPG 240 YAPPQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_19939 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP662918 | 0.0 | KP662918.1 Cajanus cajan Dof27 (Dof27) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020217878.1 | 1e-175 | uncharacterized protein LOC109801261 | ||||
Refseq | XP_020220033.1 | 1e-178 | dof zinc finger protein DOF2.2 | ||||
TrEMBL | A0A0K8K646 | 1e-177 | A0A0K8K646_CAJCA; Dof protein | ||||
STRING | GLYMA07G31860.2 | 3e-77 | (Glycine max) | ||||
STRING | XP_007159342.1 | 2e-77 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 3e-25 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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