PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19921
Common NameKK1_020508
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LSD
Protein Properties Length: 112aa    MW: 12163 Da    PI: 7.6007
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19921genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1482e-154468125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg+Cr lLsYPrGA++V+C++C+tV
  C.cajan_19921 44 CGSCRRLLSYPRGAKHVKCSCCQTV 68
                   ************************9 PP

2zf-LSD142.21.4e-1382106125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+C +lL+YP+GA+ VRC++C +V
  C.cajan_19921  82 CGSCAVLLMYPYGASQVRCSSCRFV 106
                    **********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010537.0E-194171IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-124468IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.3E-1279107IPR005735Zinc finger, LSD1-type
PfamPF069436.4E-1182106IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MHSQQTEKEE DDEGPPPGWQ PIPTHPPPPP PPPPRPSGWA QMVCGSCRRL LSYPRGAKHV  60
KCSCCQTVNI VLEGDQVGQV KCGSCAVLLM YPYGASQVRC SSCRFVTEIG VC
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213031.13e-75protein LOL2
SwissprotO654262e-35LOL2_ARATH; Protein LOL2
TrEMBLA0A151UAD03e-75A0A151UAD0_CAJCA; Uncharacterized protein
STRINGXP_007159388.11e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-35lsd one like 2