PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_19921 | ||||||||
Common Name | KK1_020508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LSD | ||||||||
Protein Properties | Length: 112aa MW: 12163 Da PI: 7.6007 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48 | 2e-15 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+tV C.cajan_19921 44 CGSCRRLLSYPRGAKHVKCSCCQTV 68 ************************9 PP | |||||||
2 | zf-LSD1 | 42.2 | 1.4e-13 | 82 | 106 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+ VRC++C +V C.cajan_19921 82 CGSCAVLLMYPYGASQVRCSSCRFV 106 **********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 7.0E-19 | 41 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.3E-12 | 79 | 107 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.4E-11 | 82 | 106 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MHSQQTEKEE DDEGPPPGWQ PIPTHPPPPP PPPPRPSGWA QMVCGSCRRL LSYPRGAKHV 60 KCSCCQTVNI VLEGDQVGQV KCGSCAVLLM YPYGASQVRC SSCRFVTEIG VC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_19921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213031.1 | 3e-75 | protein LOL2 | ||||
Swissprot | O65426 | 2e-35 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A151UAD0 | 3e-75 | A0A151UAD0_CAJCA; Uncharacterized protein | ||||
STRING | XP_007159388.1 | 1e-57 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13026 | 31 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-35 | lsd one like 2 |