PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19873
Common NameKK1_020460
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YA
Protein Properties Length: 370aa    MW: 40554.6 Da    PI: 6.7483
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19873genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA50.85.3e-16175212139
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpyl 39 
                    +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +ksrk+ l
  C.cajan_19873 175 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKSRKEQL 212
                    69****************************.99999877 PP
2CBFB_NFYA431.5e-132402633558
      CBFB_NFYA  35 rkpylheSRhkhAlrRpRgsgGrF 58 
                     +pylheSRh+hA+rR+Rg+gGrF
  C.cajan_19873 240 TQPYLHESRHQHAMRRARGTGGRF 263
                    69*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.8E-25173266IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115231.271174266IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.7E-28176263IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860179199IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016021Cellular Componentintegral component of membrane
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQSKSETANR LRSDPHTFQS GGVYSEPWWR GIGYNPLAQT MAGANASNSS SLECPNGDSE  60
SNEEGQSLSN SGMNEEDDDA TKDSQPAAPN EPGNYGQEQQ GMQHTASSAP SMREECLTQA  120
PQLELVGHSI ACATNPYQDP YYGGMMAAYG HQQMGYAPFI GMPHARMPLP LEMAQEPVYV  180
NAKQYQGILR RRQARAKAEL EKKLIKSRKE QLVVYRLLLV LLPCLIFLGS LLGYANFCST  240
QPYLHESRHQ HAMRRARGTG GRFAKKTDAD GSNNSGKEKD NGTDSVLSSQ SISSSGSEPL  300
HSDSAETWNS PNMQQDARAS KVHNRFGAPS YQNVSGSYHN HNGLQSSAYH SSSGERMEER  360
ACSGQQLNHN
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19873
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234010.10.0nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLA0A151UA910.0A0A151UA91_CAJCA; Nuclear transcription factor Y subunit A-1
STRINGGLYMA18G07890.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.44e-80nuclear factor Y, subunit A1