PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_19305
Common NameKK1_019863
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family SBP
Protein Properties Length: 419aa    MW: 46360.6 Da    PI: 8.1736
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_19305genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.95.1e-42122198278
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    CqvegC  dls ak+yhr+h+vCe+hsk+p+v+++gle+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrrk+q+
  C.cajan_19305 122 CQVEGCGLDLSVAKDYHRKHRVCETHSKSPKVVIAGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQP 198
                    **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-34114183IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496119196IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-39120201IPR004333Transcription factor, SBP-box
PfamPF031103.6E-32122195IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
VMEWNAKSLG QWDWEHLFFF NAKATENPRL QPNNCSEADQ EINVGALYPS GGSACSGSEL  60
IHASSSRSSK SASNNSSSNG DSKASILTLE GSDPKKPSSF DVPISSGKKY KTSSQNLQHP  120
SCQVEGCGLD LSVAKDYHRK HRVCETHSKS PKVVIAGLER RFCQQCSRFH ALSEFDDKKR  180
SCRRRLSDHN ARRRKPQPDA IQLNPSALSS SPYVHFYDKS IIISIYLIHV YSADGRQIMN  240
PFAFSRTATN LAWQDIHSSK LPQTKDFLPK PAKAFNKIPS IVSMISDDAS GLLTSRGIAT  300
KSNVPGIEDP NTSCDPNATQ DVNRALSLLS TNSWGAYETK SLSLDHSTRT TGITQAITHS  360
MSQRLPFPSS EYWHADQQQP PPPSTMCISF SDCDNSNRFQ DFQLLSAPYE SGFPCNQLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-271221951184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177194KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_19305
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939851e-139BT093985.1 Soybean clone JCVI-FLGm-24F23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129944.10.0squamosa promoter-binding-like protein 12 isoform X2
TrEMBLA0A151U8N90.0A0A151U8N9_CAJCA; Squamosa promoter-binding-like protein 12 (Fragment)
STRINGXP_007163771.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-51squamosa promoter binding protein-like 2