PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_19301

Common Name

KK1_019859

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

CAMTA

Protein Properties

Length: 870aa MW: 97698.6 Da PI: 6.2466

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_19301	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	173.5	2.9e-54	13	128	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 +e kkrwlk+ e++ iL n+ek e+t++++++p gsl+L+nr+++r+frkDG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+een+tfqrr C.cajan_19301 13 QEaKKRWLKPVEVLYILRNHEKCEFTHQPPHQPAGGSLFLFNRRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNVEILNCYYAHGEENRTFQRR 108 5669****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylev 117 +yw+Le e+e++vlvhy+e+ C.cajan_19301 109 SYWMLEPEYEHVVLVHYRET 128 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	78.28	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	9.6E-70	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.3E-47	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.2E-5	332	417	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	6.4E-6	332	412	IPR002909	IPT domain
SuperFamily	SSF81296	2.8E-15	333	416	IPR014756	Immunoglobulin E-set
CDD	cd00102	0.00219	333	416	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.0E-16	528	623	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.671	529	621	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-16	533	623	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.3E-8	546	623	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.01E-13	549	621	No hit	No description
PROSITE profile	PS50088	11.06	562	594	IPR002110	Ankyrin repeat
SMART	SM00248	0.0038	562	591	IPR002110	Ankyrin repeat
SMART	SM00248	1500	601	630	IPR002110	Ankyrin repeat
SMART	SM00015	270	679	701	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.455	680	709	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	2.2E-7	683	783	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	1.5	731	753	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.95	732	761	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0082	734	752	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	7.2E-4	754	776	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.304	755	779	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.0E-4	757	776	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence Send to blast
MEGLEYDIDD LFQEAKKRWL KPVEVLYILR NHEKCEFTHQ PPHQPAGGSL FLFNRRVLRF 60 FRKDGHNWRK KKDGRTVGEA HERLKVGNVE ILNCYYAHGE ENRTFQRRSY WMLEPEYEHV 120 VLVHYRETSE GKSNSEPVSQ LSPGSSPLFS QSHSSYSAYN PGTTSMFGDS CEPNQNFSSP 180 GSLEVTSDAQ ALRQLEEQLS LNDDSFDEIA LNLTSCQDQR VVYKQDKSAA SSGPNDEVQP 240 YHGYNARQDD SGTNYHDLLD DALDGNEKPI YWKKVLESSV FSFSQDNSGI NFSPFSLVET 300 PGTYETYFDQ IQIQEPLAVD SSLTVVQKPK FIIKAVSPEF CYSTEATKVI IIGSFLCHHS 360 DSTWACMFGD VEVPAEIIQD GVICCEAPSD LLGKVNLCVT SGNRIPCSEG REFEFRNKSS 420 SCAPCNSLET EGSRSPEDLL LLVRFAEMLL SASTEKGDNR ECGSHLSTKQ NDDDDSWSHI 480 IDTLLVGTGT SSGTVDWLLE ELLKDRLHLW LSSRSHERDE GTGCSLSKKE QGIIHMVSGL 540 GFTWALNPIL SCGVNINFRD INGWTALHWA ARFGREKMVA SLIASGASAG AVTDPSAQDP 600 TGKTAASIAA SHGHKGLAGY LSEVDLTSHL SSLTLEESEM SKGCSEREAD LTVKRVSEEN 660 IVAGEDQVSL RASLDAVRNA AQAAARIQAA FREHSFRKRK DREAAAAATA GCIDDDISVL 720 MLQFSPRSLR DYNSAALSIQ KKYRGWKGRK EFLALRQKVV KIQACVRGYQ VRKQYKLILW 780 AVGILDKVVL RWRRKRVGLR ILQQEMETNE DESDDEDFLN VFRKEKVYAS IQNALKRVLS 840 MVHYTGARQQ YRRLLDLYRQ AKVNKLINVK

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence Send to blast

MEGLEYDIDD LFQEAKKRWL KPVEVLYILR NHEKCEFTHQ PPHQPAGGSL FLFNRRVLRF  60
FRKDGHNWRK KKDGRTVGEA HERLKVGNVE ILNCYYAHGE ENRTFQRRSY WMLEPEYEHV  120
VLVHYRETSE GKSNSEPVSQ LSPGSSPLFS QSHSSYSAYN PGTTSMFGDS CEPNQNFSSP  180
GSLEVTSDAQ ALRQLEEQLS LNDDSFDEIA LNLTSCQDQR VVYKQDKSAA SSGPNDEVQP  240
YHGYNARQDD SGTNYHDLLD DALDGNEKPI YWKKVLESSV FSFSQDNSGI NFSPFSLVET  300
PGTYETYFDQ IQIQEPLAVD SSLTVVQKPK FIIKAVSPEF CYSTEATKVI IIGSFLCHHS  360
DSTWACMFGD VEVPAEIIQD GVICCEAPSD LLGKVNLCVT SGNRIPCSEG REFEFRNKSS  420
SCAPCNSLET EGSRSPEDLL LLVRFAEMLL SASTEKGDNR ECGSHLSTKQ NDDDDSWSHI  480
IDTLLVGTGT SSGTVDWLLE ELLKDRLHLW LSSRSHERDE GTGCSLSKKE QGIIHMVSGL  540
GFTWALNPIL SCGVNINFRD INGWTALHWA ARFGREKMVA SLIASGASAG AVTDPSAQDP  600
TGKTAASIAA SHGHKGLAGY LSEVDLTSHL SSLTLEESEM SKGCSEREAD LTVKRVSEEN  660
IVAGEDQVSL RASLDAVRNA AQAAARIQAA FREHSFRKRK DREAAAAATA GCIDDDISVL  720
MLQFSPRSLR DYNSAALSIQ KKYRGWKGRK EFLALRQKVV KIQACVRGYQ VRKQYKLILW  780
AVGILDKVVL RWRRKRVGLR ILQQEMETNE DESDDEDFLN VFRKEKVYAS IQNALKRVLS  840
MVHYTGARQQ YRRLLDLYRQ AKVNKLINVK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_19301

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020210178.1	0.0	calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A151U8L5	0.0	A0A151U8L5_CAJCA; Calmodulin-binding transcription activator 4
STRING	GLYMA18G00840.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4548	29	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-159	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]