PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_18894

Common Name

KK1_019436, KK1_019444

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

TCP

Protein Properties

Length: 292aa MW: 32993.7 Da PI: 10.0808

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_18894	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	155.2	4e-48	22	154	2	132
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaa 95 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt +++s+ s++ ++++ +s+ +++ +++++ + C.cajan_18894 22 TTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTLSKQSADSFSssSEGEVVSMIHQDLRQQQRRVDL 117 78************************************************************99999777756666666666666667777777 PP TCP 96 kskksqksaasalnlakesrakarararertrekmri 132 +++ +++a ++ +++kesr+karararert++km++ C.cajan_18894 118 EERMLKEPAYCVKAKMKESREKARARARERTSSKMCN 154 99999*****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-40	22	153	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.401	24	82	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.188	134	151	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MLNQDLSGGA LYGIAKKPVK KTTKKDRHSK IHTSQGLRDR RVRLSIEIAR KFFDLQDMLG 60 FDKASNTLDW LFTKSKKAIK ELTLSKQSAD SFSSSSEGEV VSMIHQDLRQ QQRRVDLEER 120 MLKEPAYCVK AKMKESREKA RARARERTSS KMCNISGEGK VQELKKKCPA TENHPQILNQ 180 LRTPSPLQLH SQDMGGEVPR DDEFNVIEES IVIKRKLKHA LMSSIHQNVV IPKEASVSNS 240 DYNSFPNLCP NWEANNASTG RPAFCAIASM NLSTGLHIFG KSWEECTNPH PS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_18894

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220030.1	0.0	transcription factor DICHOTOMA
Refseq	XP_020220039.1	0.0	transcription factor DICHOTOMA
TrEMBL	A0A151TCU1	0.0	A0A151TCU1_CAJCA; Transcription factor TCP1
STRING	GLYMA08G28691.1	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	9e-27	TCP family protein