PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_18887 | ||||||||
Common Name | KK1_019436, KK1_019444 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 292aa MW: 32993.7 Da PI: 10.0808 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 155.2 | 4e-48 | 22 | 154 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksaa 95 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt +++s+ s++ ++++ +s+ +++ +++++ + C.cajan_18887 22 TTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTLSKQSADSFSssSEGEVVSMIHQDLRQQQRRVDL 117 78**************************************************************99999777756666666666666667777777 PP TCP 96 kskksqksaasalnlakesrakarararertrekmri 132 +++ +++a ++ +++kesr+karararert++km++ C.cajan_18887 118 EERMLKEPAYCVKAKMKESREKARARARERTSSKMCN 154 99999*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-40 | 22 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.401 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.188 | 134 | 151 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MLNQDLSGGA LYGIAKKPVK KTTKKDRHSK IHTSQGLRDR RVRLSIEIAR KFFDLQDMLG 60 FDKASNTLDW LFTKSKKAIK ELTLSKQSAD SFSSSSEGEV VSMIHQDLRQ QQRRVDLEER 120 MLKEPAYCVK AKMKESREKA RARARERTSS KMCNISGEGK VQELKKKCPA TENHPQILNQ 180 LRTPSPLQLH SQDMGGEVPR DDEFNVIEES IVIKRKLKHA LMSSIHQNVV IPKEASVSNS 240 DYNSFPNLCP NWEANNASTG RPAFCAIASM NLSTGLHIFG KSWEECTNPH PS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_18887 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220030.1 | 0.0 | transcription factor DICHOTOMA | ||||
Refseq | XP_020220039.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A151TCU1 | 0.0 | A0A151TCU1_CAJCA; Transcription factor TCP1 | ||||
STRING | GLYMA08G28691.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 9e-27 | TCP family protein |