PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18251
Common NameKK1_018785
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family AP2
Protein Properties Length: 538aa    MW: 59340 Da    PI: 7.25
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18251genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-15211270155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  C.cajan_18251 211 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 270
                    57*******************666664478446*************************98 PP
2AP246.87.6e-15313364155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  C.cajan_18251 313 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 364
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-17211280IPR016177DNA-binding domain
CDDcd000182.84E-22211280No hitNo description
PfamPF008479.2E-12211270IPR001471AP2/ERF domain
SMARTSM003804.8E-29212284IPR001471AP2/ERF domain
PROSITE profilePS5103219.164212278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-15212279IPR001471AP2/ERF domain
PRINTSPR003671.8E-6213224IPR001471AP2/ERF domain
CDDcd000188.29E-25313374No hitNo description
SuperFamilySSF541716.21E-18313374IPR016177DNA-binding domain
PfamPF008472.6E-10313364IPR001471AP2/ERF domain
SMARTSM003807.0E-34314378IPR001471AP2/ERF domain
PROSITE profilePS5103219.058314372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-18314373IPR001471AP2/ERF domain
PRINTSPR003671.8E-6354374IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MGSMNLLGFS LSPQEHPSSQ DHSQTAPSRF GFNSDGISST DVAGECFDLT SDSTPHLLNL  60
PSYGIYEAFH RNNNIHTTQD WKENYNSQNL LLGTSCNNQN MNHNQQQQQQ QPKLENFLGG  120
HSFGDHEHQT YGGNSATTDY INSIGLSMIK TWLRNQPPHS ENNNESGGNS KSKSSSDNKQ  180
PLTTVALDTT QTGVIETAPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT  240
RKGRQVYLGG YDKEEKAARA YDLAALKYWG TTTTTNFPIS HYEKELEEMK HMTRQEYVAS  300
LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI  360
KFRGLSAVTN FDMSRYDVKS ILESTTLPIG GAAKRLHPMM SMDSASIDNS SSSNSVVYDG  420
YGGGGGGGYV IPMGTTTTVV ASDGDQSQRS NNGFGENEMK ALGYESVYGS NDAYHAHARN  480
LYYLSQQQPS SVDAVKASAY DQGSSCNTWV PTAIPTLAPR STSMALCHGA PPFSLLHE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758560.0HM775856.1 Glycine max babyboom 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219921.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-155BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A151TAY90.0A0A151TAY9_CAJCA; AP2-like ethylene-responsive transcription factor BBM2
STRINGXP_007139701.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-147AP2 family protein