PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_18020
Common NameKK1_018551
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 447aa    MW: 49875.9 Da    PI: 6.5078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_18020genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  +++ G g+W++ +++ g++R++k+c++rw +yl
    C.cajan_18020 14 KGPWTPEEDQKLIAFIEKNGHGSWRALPAKAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.98.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
    C.cajan_18020  67 RGKFSLQEEQTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.865961IPR017930Myb domain
SuperFamilySSF466895.86E-3011108IPR009057Homeodomain-like
SMARTSM007173.0E-141363IPR001005SANT/Myb domain
PfamPF002499.4E-161461IPR001005SANT/Myb domain
CDDcd001679.08E-111661No hitNo description
PROSITE profilePS5129425.62262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665116IPR009057Homeodomain-like
SMARTSM007174.8E-1766114IPR001005SANT/Myb domain
PfamPF002494.3E-1667112IPR001005SANT/Myb domain
CDDcd001677.51E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGRSPCCEKT GLKKGPWTPE EDQKLIAFIE KNGHGSWRAL PAKAGLRRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLDKMG  120
IDPTTHKPKM ESLGHSKDGS NLSHMAQWES ARLEAEARLV RESKLQEQTQ TQTLTLITTP  180
TRLILNKIIP QQQQRQHSLP PCLDVLKAWQ GSWSNDNDNN NNNNKYLSSL SSSLTPPLLN  240
DKKVHSMYAM MLATDDLESP TSTLCFPESN AHVQINTTNV NMVSTNHHVG LMLMNDVNNY  300
LLPPTTTVAD SSVDEFIFAK SLGTCGAAAY KHNGAGDEGL AETEKSVYDT MSCLQDHDDI  360
MVAVDALRGA GYRNNNGGDN DNSNVSMFTP FSGNVMVGFN NVNDVSEFDS NEDLAAENMD  420
VINGDGSSCG MSFEENKDYW NSMLGYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121175109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_18020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020218978.10.0transcription factor MYB20 isoform X1
TrEMBLA0A151TAD00.0A0A151TAD0_CAJCA; Transcription factor MYB39
STRINGGLYMA02G12266.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-101myb domain protein 16