PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17927 | ||||||||
Common Name | KK1_018458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24814.3 Da PI: 6.3404 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.7 | 8.2e-38 | 26 | 127 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk++r+kC++dC++apyf +++ ++f +vhk+FGasnvlk+l +++ ++r++am+s+++eA+ar+ dPv+G+++++ lqqq+++l+ ela C.cajan_17927 26 PCGACKYQRKKCTNDCMFAPYFGSDHgLAQFTIVHKIFGASNVLKMLLDVEVNRRQEAMRSILFEAQARLIDPVNGCLSTMIGLQQQVASLQGELA 121 7*********************999978******************************************************************** PP DUF260 96 llkeel 101 ++k++l C.cajan_17927 122 MVKNQL 127 **9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.603 | 25 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-36 | 26 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSGGDGTSSV TKCKAKHAML EVSSPPCGAC KYQRKKCTND CMFAPYFGSD HGLAQFTIVH 60 KIFGASNVLK MLLDVEVNRR QEAMRSILFE AQARLIDPVN GCLSTMIGLQ QQVASLQGEL 120 AMVKNQLINT KILYEELFNS TYQQQQQLQP NINVAGQPYS NNSPASTNFM NMNGFNSNFD 180 HLGMQTTPLT DNLKPLQFSE LPQNEEENMI LQVSNNDMTH LLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-26 | 26 | 129 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-26 | 26 | 129 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17927 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020218452.1 | 1e-167 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 8e-49 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A151TA05 | 1e-165 | A0A151TA05_CAJCA; LOB domain-containing protein 20 | ||||
STRING | XP_007162000.1 | 4e-74 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 4e-49 | LOB domain-containing protein 20 |