PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17916 | ||||||||
Common Name | KK1_018447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 28049.6 Da PI: 7.8308 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.9 | 4.4e-16 | 191 | 227 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ C.cajan_17916 191 CHHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 227 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.868 | 52 | 87 | IPR010399 | Tify domain |
SMART | SM00979 | 8.5E-7 | 52 | 87 | IPR010399 | Tify domain |
Pfam | PF06200 | 8.0E-10 | 55 | 86 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.719 | 120 | 162 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.3E-15 | 120 | 161 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.629 | 185 | 244 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.8E-10 | 185 | 238 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.2E-15 | 189 | 232 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 8.08E-12 | 189 | 235 | No hit | No description |
CDD | cd00202 | 4.75E-15 | 190 | 234 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 191 | 218 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.1E-14 | 191 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MATVNPQPLQ FEDPDIPVDD DDDAMDELED ANVNSVSVAN AASASHEAVL AMPSRTSELT 60 LSFEGEVYVF PAVTPQKVQA VLLLLGGRDV QAGMPTVEQP IDQSNRGMGD TPKRSNLSRR 120 IASLVRFREK RKERCFDKKI RYSVRKEVAQ RMHRKNGQFA SLKENPGSSN WDSAQSTGQD 180 GTLHSESVRR CHHCGVSENN TPAMRRGPAG PRTLCNACGL MWANKGTLRD LSKGGRNLTV 240 EQSDLVCKTG SLMFF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 114 | DTPKRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17916 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093450 | 0.0 | BT093450.1 Soybean clone JCVI-FLGm-17E18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020218627.1 | 0.0 | GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 2e-71 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A151T9X1 | 0.0 | A0A151T9X1_CAJCA; GATA transcription factor 27 | ||||
STRING | GLYMA04G10340.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 1e-71 | ZIM-like 1 |
Publications ? help Back to Top | |||
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