PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17848 | ||||||||
Common Name | KK1_018374 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | MYB | ||||||||
Protein Properties | Length: 514aa MW: 55980.8 Da PI: 4.7339 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.4e-18 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed++lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l C.cajan_17848 43 KGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLLRCGKSCRLRWANHL 90 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 25.8 | 2.5e-08 | 96 | 126 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g++T+eE+ l++++++++G++ W++ a++++ C.cajan_17848 96 KGAFTAEEERLIAELHAKMGNK-WARMAAHLP 126 799*******************.********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.176 | 38 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 41 | 93 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-15 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-16 | 43 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.68E-24 | 44 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.12E-11 | 45 | 90 | No hit | No description |
PROSITE profile | PS50090 | 6.562 | 91 | 126 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-14 | 94 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0058 | 95 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-7 | 96 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.54E-4 | 98 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 514 aa Download sequence Send to blast |
MRRLKNDINE DEVLPNDQTG AQLNGAQLND EGSEGSAGVV LKKGPWTSTE DDILVDYVKK 60 HGEGNWNAVQ KHTGLLRCGK SCRLRWANHL RPNLKKGAFT AEEERLIAEL HAKMGNKWAR 120 MAAHLPESQH SQSSGGLNGD NKMHPDFLQK NSYEIQDSIF DSLKDNQGII PYMPELSDIS 180 VYGNMLKGFD SSQYCSFVPP TSPKHKRLRE STIPFIDSSD MSRNGLYPFD QIRDNNSDEI 240 AQSFGMPAPL DPGPSSHSSI CYSHSLSNGN SSTSKPTYEA VKLELPSLQY PELDLGSWGT 300 SPPPSLLESV DDFIQSPTPI STLESDCSSP QNSGLLDALL YQARTLSSSK NHCSDKSSNS 360 STATPGDRAD SSALNVHETE WEDYADPVSP FGATSILNEC PALNANANSL DKQLPVQTFN 420 GDILKLESVD EVWTPNGENQ TLSLLNITRP DFLLASDWHD LSSGHGKNLA FTTDATTTLG 480 LGDDLATDHK HVTAGTSKSS QMWGFGSCAT AMIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 41 | 126 | 5 | 89 | B-MYB |
1h8a_C | 3e-21 | 41 | 126 | 25 | 109 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-21 | 40 | 126 | 1 | 86 | C-Myb DNA-Binding Domain |
1msf_C | 2e-21 | 40 | 126 | 1 | 86 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17848 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU328398 | 0.0 | EU328398.1 Glycine max GAMYB protein (GAMYB) mRNA, complete cds. | |||
GenBank | KC525897 | 0.0 | KC525897.1 Glycine max GAMBY1-like family protein (GAMYB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219565.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A151T9R6 | 0.0 | A0A151T9R6_CAJCA; Transcription factor GAMYB | ||||
STRING | GLYMA13G25716.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 2e-79 | myb domain protein 33 |