PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_17814

Common Name

KK1_018340

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

NAC

Protein Properties

Length: 410aa MW: 46551.8 Da PI: 7.0396

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_17814	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	185.6	1.2e-57	16	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdee++++yL++kv+++ +++ +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ k C.cajan_17814 16 LPPGFRFHPTDEEIISYYLTEKVKNSGFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYKGK 110 79***********************999.88***********99999*************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 g+lvg+kktLvfykgrapkgekt+Wvmhe+rle C.cajan_17814 111 GNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 143 ****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-61	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.468	16	167	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MEEPIVLNKG EEPLDLPPGF RFHPTDEEII SYYLTEKVKN SGFSAIAIGE ADLNKCEPWD 60 LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEF RLEGKFASYS LPKAAKDEWV VSRVFHKNTD LRKTSIPGLL 180 RINSLGDDLL DYSSLPPLMD PTYVNTNANT NHTTTNPLSS NKSQSDGYYL PSFSINSNHH 240 HHLLMKPQDH HQRTYEIPTI NYTSNSNQAN LSNNVNPMGN NTLSQPLNMF NDYYMHQNRI 300 KSSIMPSVAT GFGNNNNNNH DQAILRALSA KNNDHLGELE KQCKMEQFSS NHSQDTGLSN 360 DRNTDTSSVV SKQDNNNNNM GGNRALYEDF EGPSSVAPLS DLECLQWEDY

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MEEPIVLNKG EEPLDLPPGF RFHPTDEEII SYYLTEKVKN SGFSAIAIGE ADLNKCEPWD  60
LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL  120
VFYKGRAPKG EKTNWVMHEF RLEGKFASYS LPKAAKDEWV VSRVFHKNTD LRKTSIPGLL  180
RINSLGDDLL DYSSLPPLMD PTYVNTNANT NHTTTNPLSS NKSQSDGYYL PSFSINSNHH  240
HHLLMKPQDH HQRTYEIPTI NYTSNSNQAN LSNNVNPMGN NTLSQPLNMF NDYYMHQNRI  300
KSSIMPSVAT GFGNNNNNNH DQAILRALSA KNNDHLGELE KQCKMEQFSS NHSQDTGLSN  360
DRNTDTSSVV SKQDNNNNNM GGNRALYEDF EGPSSVAPLS DLECLQWEDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	14	173	18	174	NAC domain-containing protein 19
3swm_B	2e-51	14	173	18	174	NAC domain-containing protein 19
3swm_C	2e-51	14	173	18	174	NAC domain-containing protein 19
3swm_D	2e-51	14	173	18	174	NAC domain-containing protein 19
3swp_A	2e-51	14	173	18	174	NAC domain-containing protein 19
3swp_B	2e-51	14	173	18	174	NAC domain-containing protein 19
3swp_C	2e-51	14	173	18	174	NAC domain-containing protein 19
3swp_D	2e-51	14	173	18	174	NAC domain-containing protein 19
4dul_A	2e-51	14	173	15	171	NAC domain-containing protein 19
4dul_B	2e-51	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_17814

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031270	0.0	KT031270.1 Glycine max clone HN_CCL_56 NAC transcription factor (Glyma16g04720.1_like1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020219836.1	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	1e-112	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A151T9N3	0.0	A0A151T9N3_CAJCA; Protein CUP-SHAPED COTYLEDON 2
STRING	XP_007161814.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-102	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]