PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17753 | ||||||||
Common Name | KK1_018276 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | GRF | ||||||||
Protein Properties | Length: 382aa MW: 43519.1 Da PI: 8.4464 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.9 | 4.8e-25 | 78 | 122 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e C.cajan_17753 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122 79****************************************985 PP | |||||||
2 | QLQ | 55.1 | 2.3e-19 | 12 | 47 | 1 | 36 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L+ i+ C.cajan_17753 12 SPFTPTQWQELEQQALVFKYMVTGTPIPPDLVYSIK 47 89*****************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.1E-11 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-14 | 13 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.044 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.325 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.6E-21 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MMSASASARN RSPFTPTQWQ ELEQQALVFK YMVTGTPIPP DLVYSIKRSL DSSISSRLFP 60 HHPIGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV 120 EVSSATSTAT NTSQTIPSYS RNLSLNNNNS NPNITSPSSF PFSPLPSSIS CESQPFPQSY 180 QNSSLNPFFY SQSNSSRPPD TDFPPQDATT HQLFMDSGSY SHDEKDYSRH VHGTREDVDE 240 RAFFPEASGS ARSYTDSYQQ LSMSSYKSYT NTNFQNMNDN TPRQQEQQHC FVLGTDFKST 300 RPSKEKEAET SQRPLHRFFG EWPPKNTTDS WLDLASNSRI PTGDDPAYSS SSLIIIPFLI 360 FQFMLTYNKI ICTYVVSFIL GR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17753 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-172 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219153.1 | 0.0 | growth-regulating factor 5 isoform X1 | ||||
TrEMBL | A0A151T9H2 | 0.0 | A0A151T9H2_CAJCA; Uncharacterized protein | ||||
STRING | XP_007135443.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-56 | growth-regulating factor 5 |