PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_17338 | ||||||||
Common Name | KK1_017851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 242aa MW: 26807.5 Da PI: 8.4031 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17 | 1.7e-05 | 214 | 236 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L+ H + H C.cajan_17338 214 VCPKCSRGFRDPVSLVEHVERdH 236 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 4.84E-13 | 6 | 51 | No hit | No description |
PROSITE profile | PS51039 | 7.78 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 4.7E-11 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.0E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0065 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 8.6E-11 | 90 | 147 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.35E-9 | 93 | 142 | No hit | No description |
PROSITE profile | PS51039 | 7.999 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.5E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.03 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 8.85 | 213 | 241 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 236 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGTPEFPDLG KHCAVSDCKL IDFLPFTCDR CDQVYCLEHR SYIKHQCTKA DKRDVTVVIC 60 PLCAKGVRLV PDQDPNITWE NHVNTECDPS NYEKVTKKKK CPVPGCREIL VFSNTIKCRD 120 CTVDHCLKHR YGPDHKCPGP KNLQTSFSFM NILNGSKKEG SKPKSSSSAS SKWTTSFLNT 180 ASNIRASAEA GVSKLSGEIN QAWQTARGAV TIDVCPKCSR GFRDPVSLVE HVERDHGGSS 240 RA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_17338 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098410 | 0.0 | BT098410.1 Soybean clone JCVI-FLGm-16J1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219148.1 | 1e-163 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 isoform X3 | ||||
Swissprot | Q9SCM4 | 1e-111 | SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
TrEMBL | A0A151T892 | 1e-180 | A0A151T892_CAJCA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
STRING | GLYMA02G31550.2 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57480.1 | 1e-111 | C2H2 family protein |
Publications ? help Back to Top | |||
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