PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_17254

Common Name

KK1_017765

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

TCP

Protein Properties

Length: 422aa MW: 45574.1 Da PI: 7.5266

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_17254	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.4	1.3e-34	37	182	2	115
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++ ++s +ss+s+ s++ C.cajan_17254 37 AAPKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIGAATGTGTIPANFSsLTVSLRSSGSTLSAPpsksapht 132 56799****************************************************************999888888888886666677778899 PP TCP 89 ..............................kaaksaakskksqksaasalnlakesr 115 +++ +++++++ +++++++ C.cajan_17254 133 fhgalalahhpyeeafqqhtallgfhphhhHHQHQHQHPQQH-------PHPHQHQH 182 998887777777777777777776555432111111111111.......11111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.7E-41	42	219	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.59	43	97	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MELSDLQNNK QSSSNTAIAT RSDDSAKKTT QHLSTTAAPK RSTKDRHTKV EGRGRRIRMP 60 ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIGAATGT GTIPANFSSL TVSLRSSGST 120 LSAPPSKSAP HTFHGALALA HHPYEEAFQQ HTALLGFHPH HHHHQHQHQH PQQHPHPHQH 180 QHQHQHQHPQ QQLLSADQIA EALPSGGDSG ESYLRKRYRE DLFKDDNINN QSQNESGDGS 240 SPKTPNLQLP KQQQTEAGPG LHRPASLLPA TAMWAVAPAP ASGPAGSTIW MLPVTAAASS 300 SSGAAASSAS ASASSETQMW PFTQSGFMPR FNLPGALEFQ GARAGSLQLG SMLMPPQPSQ 360 HLGLAMSDSN LGMLAALNAY TRAGFNINSD NHHMEHPHQH HHQHHHQPQP SESGEDAPNS 420 SQ

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MELSDLQNNK QSSSNTAIAT RSDDSAKKTT QHLSTTAAPK RSTKDRHTKV EGRGRRIRMP  60
ATCAARVFQL TRELGHKSDG ETIEWLLQQA EPAIGAATGT GTIPANFSSL TVSLRSSGST  120
LSAPPSKSAP HTFHGALALA HHPYEEAFQQ HTALLGFHPH HHHHQHQHQH PQQHPHPHQH  180
QHQHQHQHPQ QQLLSADQIA EALPSGGDSG ESYLRKRYRE DLFKDDNINN QSQNESGDGS  240
SPKTPNLQLP KQQQTEAGPG LHRPASLLPA TAMWAVAPAP ASGPAGSTIW MLPVTAAASS  300
SSGAAASSAS ASASSETQMW PFTQSGFMPR FNLPGALEFQ GARAGSLQLG SMLMPPQPSQ  360
HLGLAMSDSN LGMLAALNAY TRAGFNINSD NHHMEHPHQH HHQHHHQPQP SESGEDAPNS  420
SQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_17254

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020221746.1	0.0	transcription factor TCP8
Swissprot	Q9C518	1e-87	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A151T807	0.0	A0A151T807_CAJCA; Transcription factor TCP8
STRING	XP_007148546.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-67	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]