 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
C.cajan_16718 |
| Common Name | KK1_017206 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
|
| Family |
GRAS |
| Protein Properties |
Length: 555aa MW: 62329.1 Da PI: 6.2224 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| C.cajan_16718 | genome | IIPG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 422 | 5e-129 | 181 | 553 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l+e+L++cA+avs++d e a ++++ l +++s gdp qRl ay++e+L+arl +s+s++ykal++++ + s++ +++++++++++P+ kf++
C.cajan_16718 181 LKEVLIRCAQAVSDDDIETAVGFMNNvLPKMVSVVGDPSQRLGAYMLEGLRARLGSSGSHIYKALKCEQPA---SKDLMSYMHILYQICPYWKFAY 273
5789*******************98626788***************************************9...99999***************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeele.etgerLakfAeelgvpfefnvlvakrled 188
+ aN I ea+ +e+r+HiiDf+i qG+QW+ L+qaLa+Rp+gpp +R+Tgv++++s+ + l+ +g+rL+++A+++gvpfef+ +a + ++
C.cajan_16718 274 ISANVVIGEAMLNESRIHIIDFQIAQGTQWMLLIQALACRPGGPPFIRVTGVDDSQSFhaRGGGLHiVVGKRLSDYAKSCGVPFEFHS-AAMSGSE 368
******************************************************999987555555268*******************.899**** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
+ele+L ++pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+++yy+a+f+s+++ lpr++++ri+
C.cajan_16718 369 VELENLVIQPGEALAVNFPYILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETFSYYTAMFESIDVALPRDDKQRIS 464
************************************************************************************************ PP
GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
E+++++r+ivn++acegaer+erhe +kWr+r+++aGF p pls+++++ ++ +l++++++ yr+e+++g+l+lgWk+r++++ SaWr
C.cajan_16718 465 AEQHCVARDIVNMIACEGAERVERHEPWGKWRSRFSMAGFAPCPLSSSVMSAVRGMLNEFNEN-YRLEHREGALFLGWKNRAMFTSSAWR 553
*************************************************************55.*************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 555 aa
Download sequence Send
to blast |
MQTSQKHSTS AGIHLYHQPV QDIDPYTHYQ ILQSNSCHEI HDSSSQGTTI SFEPCKEQYF 60
TLESSPAIND LIGCDSPSYA SESSNSNRRS HFSPQASHSY HSDQHQSSDN TYESPTSVHS 120
SADDSYELKH KLRELEISLL GTDSDIVDSC HCCYKGGHHG APPMAKYDWD QIVEMIPKLD 180
LKEVLIRCAQ AVSDDDIETA VGFMNNVLPK MVSVVGDPSQ RLGAYMLEGL RARLGSSGSH 240
IYKALKCEQP ASKDLMSYMH ILYQICPYWK FAYISANVVI GEAMLNESRI HIIDFQIAQG 300
TQWMLLIQAL ACRPGGPPFI RVTGVDDSQS FHARGGGLHI VVGKRLSDYA KSCGVPFEFH 360
SAAMSGSEVE LENLVIQPGE ALAVNFPYIL HHMPDESVST ENHRDRLLRL VKSLSPKVVT 420
LVEQESNTNT SPFFQRFVET FSYYTAMFES IDVALPRDDK QRISAEQHCV ARDIVNMIAC 480
EGAERVERHE PWGKWRSRFS MAGFAPCPLS SSVMSAVRGM LNEFNENYRL EHREGALFLG 540
WKNRAMFTSS AWRCY
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
