PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_16549 | ||||||||
Common Name | KK1_017033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | NF-YA | ||||||||
Protein Properties | Length: 200aa MW: 22169.5 Da PI: 7.7249 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.6 | 1.5e-31 | 105 | 161 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF C.cajan_16549 105 EEPVFVNAKQYHGILRRRQSRAKAESEKKA-ARNRKPYLHESRHLHALRRARGCGGRF 161 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.0E-35 | 103 | 164 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 36.416 | 104 | 164 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.9E-27 | 106 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.0E-23 | 107 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 109 | 129 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.0E-23 | 138 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
HCFIDNEADA QQQSEPQIQP LSANGISHAG IGTQVVPYAT PPQLGTGHAV APPTYPYPDP 60 YYRSIFTPYD AQTYPPQPYG GNPMVHLQLM GIQQAGVPLP TDTVEEPVFV NAKQYHGILR 120 RRQSRAKAES EKKAARNRKP YLHESRHLHA LRRARGCGGR FLNSKKNENE QDEAASAEES 180 QSNINLNSDK NELAPSDRTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-20 | 104 | 169 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_16549 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220662.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Refseq | XP_020220663.1 | 1e-145 | nuclear transcription factor Y subunit A-7 isoform X2 | ||||
Swissprot | Q84JP1 | 8e-66 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A151T636 | 1e-146 | A0A151T636_CAJCA; Nuclear transcription factor Y subunit A-7 (Fragment) | ||||
STRING | GLYMA15G13660.2 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5379 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-45 | nuclear factor Y, subunit A7 |
Publications ? help Back to Top | |||
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