PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_16053
Common NameKK1_016520
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 589aa    MW: 64610.3 Da    PI: 5.5015
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_16053genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.9e-2256111156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    ++k +++t++q++eLe++F+++++p++++r++L+k+lgL+ +qVk+WFqNrR+++k
  C.cajan_16053  56 KKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMK 111
                    79999************************************************998 PP
2START170.51.1e-531143372206
                    HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                    la++a++elvk+ +a++p+W kss    e +n +e+ +  ++  +     + +ea r +gvv ++   lve+l+d+  +W e++a    +a+tl+v
  C.cajan_16053 114 LALSAMDELVKMTQADSPLWIKSSdgrnEVLNHEEYARMCSPYIGpkpagYVTEATRGTGVVLANGLALVETLMDVD-RWLEMFAsivaSAATLDV 208
                    5789********************99888888899999988888899999***************************.****************** PP

                    ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
          START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                    issg      galq+m ae q+lsplvp R   f+R+++q+ +g+w++vdvS+d  ++  + +++v +++lpSg++i++++ng sk+twveh  ++
  C.cajan_16053 209 ISSGtggtrsGALQVMLAEIQLLSPLVPaRQLSFLRFCKQHAEGVWAVVDVSLDIARNAANLHPLVSCRRLPSGCVIQDMPNGFSKITWVEHSQYD 304
                    ***********************************************************99*********************************** PP

                    SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                    ++++h+l r+lv+sg+ +ga +w atl rqce+
  C.cajan_16053 305 ESVIHQLCRPLVSSGIGFGAHRWIATLLRQCEC 337
                    *******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.7E-2136111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-2341107IPR009057Homeodomain-like
PROSITE profilePS5007117.70253113IPR001356Homeobox domain
SMARTSM003896.3E-1755117IPR001356Homeobox domain
PfamPF000461.1E-1956111IPR001356Homeobox domain
CDDcd000863.74E-1860111No hitNo description
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PROSITE profilePS5084841.217104340IPR002913START domain
SMARTSM002349.1E-39113337IPR002913START domain
SuperFamilySSF559611.65E-29113337No hitNo description
CDDcd088751.26E-111114336No hitNo description
PfamPF018526.7E-46115337IPR002913START domain
SuperFamilySSF559613.3E-15357558No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MEGHSEMGLI GESFDTSNLL GRMRDDEYES RSGSDNFDGG SGDDQDGGDD QPQKKKKKYH  60
RHTPQQIQEL EAFFKECPHP DEKQRTDLSK RLGLENKQVK FWFQNRRTQM KAYLALSAMD  120
ELVKMTQADS PLWIKSSDGR NEVLNHEEYA RMCSPYIGPK PAGYVTEATR GTGVVLANGL  180
ALVETLMDVD RWLEMFASIV ASAATLDVIS SGTGGTRSGA LQVMLAEIQL LSPLVPARQL  240
SFLRFCKQHA EGVWAVVDVS LDIARNAANL HPLVSCRRLP SGCVIQDMPN GFSKITWVEH  300
SQYDESVIHQ LCRPLVSSGI GFGAHRWIAT LLRQCECLAI LMSTPGTSDD PTVMNQAGRR  360
SMLKLAQRMA EYFCSGICAS SARKWDILPI GNLGDDMRIM ARKNGDDPNE APGIVLSAST  420
SVWMPVSRQK VFDFLRSGQF RGEWDMLSNG GPMQEMIRIP KGQEDGNCVS ILTANSTDSN  480
VQYLQESWTD ASGSMVVYSP INMQSLNVVM SCGDSSFVAL RPSGFAILPD GHPVNSDGSD  540
GGGSCLLTVG LQMLQNGNQT SKFTVESVET VHNLISCTIQ KIKDALGVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_16053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150419e-48AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020221720.10.0homeobox-leucine zipper protein ROC5
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A151T4P80.0A0A151T4P8_CAJCA; Homeobox-leucine zipper protein ROC5
STRINGXP_007152327.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]