PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_16001
Common NameKK1_016468
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GRAS
Protein Properties Length: 615aa    MW: 67993.7 Da    PI: 6.8252
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_16001genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.14.2e-842606152374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +++L+++A a+ +g++  a ++L+r +   +       Rl+ +++ AL++r++      ++  pp ++      e++ +++l+ e s ++k+++++
  C.cajan_16001 260 KQTLMDAAYAIVEGKHDVAMEILNRFNGSLNR----SDRLTDCMVSALKSRMNP-----VEYPPPVAD--LFAREHTESTQLLLENSVCFKVGFMA 344
                    589**********************9987665....57***************9.....333333332..348899999***************** PP

           GRAS  98 aNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    aN aIlea+ +e   +r  ++Df+i+qG+Q++ Ll a  +     ++++i +v++  +g +e++ ++ge L++ Ae+l++ fef+++++++l++l+
  C.cajan_16001 345 ANLAILEAAFEEktdNRFCVVDFEIGQGMQYMHLLSAVPA----GATVKIVAVAE--KGGEERVLAVGEMLSRHAERLRIGFEFKLIATQKLAELT 434
                    *******97666577999****************999865....479********..77***************************9999****** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L ++ +E+laVnl+++l r++desvs+e++rde+L+ vk+l P+vv+vveqe++ n+++Fl r++e+l+yy al++s++++      +r+kvE
  C.cajan_16001 435 RESLGCDADEVLAVNLAYKLNRIPDESVSTENPRDELLRRVKRLAPRVVTVVEQEMNANTAPFLVRVAETLSYYGALLESIDNN-----PDRVKVE 525
                    **********************************************************************************99.....9****** PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +  l+r+++n vaceg++r+er+e ++kWr+r+++aGF+  pls+++a+++kl l+  +   +   +v+ee+g +++gW++r+L+++SaWr
  C.cajan_16001 526 EG-LSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQTIAESIKLQLASGNtrvNSALTVKEENGGICFGWMGRTLTVASAWR 615
                    **.*************************************************999876633334499***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.049233592IPR005202Transcription factor GRAS
PfamPF035141.5E-81260615IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MNNPNAAPSS ATSNLHPLYR TQQNLPAMFL DPSSQIAQHQ TPTFLGSKRS HTEFQTYNQT  60
NNNHNHNHNH VLSNFLLRSV KPRTSFSHSS PLSPMDFPIP ELQHQSQNQN PSVYHHQTPR  120
FGVPLLHQLR PQPINLPNNG PGHMNGPNLG YRNSNLGLPQ NRVNLSVPGP VHRSEPEKIM  180
DHRLQELEKQ LLEDNDEEGE ADAASVITTS EWSETYQNLI SPGPGPVQKP VPTTTSPTSS  240
TTSSTSSSTS VASPASGCSK QTLMDAAYAI VEGKHDVAME ILNRFNGSLN RSDRLTDCMV  300
SALKSRMNPV EYPPPVADLF AREHTESTQL LLENSVCFKV GFMAANLAIL EAAFEEKTDN  360
RFCVVDFEIG QGMQYMHLLS AVPAGATVKI VAVAEKGGEE RVLAVGEMLS RHAERLRIGF  420
EFKLIATQKL AELTRESLGC DADEVLAVNL AYKLNRIPDE SVSTENPRDE LLRRVKRLAP  480
RVVTVVEQEM NANTAPFLVR VAETLSYYGA LLESIDNNPD RVKVEEGLSR KLCNSVACEG  540
RDRVERCEVF GKWRARMSMA GFQLKPLSQT IAESIKLQLA SGNTRVNSAL TVKEENGGIC  600
FGWMGRTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2629261540375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_16001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220744.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-144SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A151T4I30.0A0A151T4I3_CAJCA; Scarecrow-like protein 8
STRINGGLYMA16G29900.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-142SCARECROW-like 8