PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15742 | ||||||||
Common Name | KK1_016204 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 708aa MW: 78509.4 Da PI: 6.8427 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.3e-20 | 25 | 80 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k C.cajan_15742 25 KKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 80 678899***********************************************998 PP | |||||||
2 | START | 180.8 | 7.9e-57 | 225 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 +a a++e +++ + +ep+W+k + + ++ d + + f+++++ ++ea+r+sgvv+m++ +lv ++d + +W e ++ a t+ev C.cajan_15742 225 IASNAMEEMIRLLQTNEPLWMKAAdgrDVLDLDNYERMFPKANShlknpnVHVEASRDSGVVIMNSLTLVDMFMDPN-KWMELFPtivtMARTIEV 319 67889*******************999888889999999888889999999**************************.999999999999****** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 issg g lqlm+ elq+lsplv+ R+f+f+Ry++q ++g w+ivdvS d +q+++ ++ R+++lpSg i++++ng+skvtw+ehv+++ C.cajan_15742 320 ISSGmmgghsGSLQLMYEELQVLSPLVStREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQ-FAPQFRSHRLPSGVFIQDMPNGYSKVTWIEHVEVE 414 ***********************************************************9.8********************************** PP SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206 +++p h l+r l+ sg+a+ga++w+ tlqr ce+ C.cajan_15742 415 DKTPvHRLYRNLIYSGIAFGAQRWLTTLQRMCER 448 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.13E-20 | 5 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 10 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.074 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-19 | 23 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.91E-19 | 24 | 83 | No hit | No description |
Pfam | PF00046 | 1.5E-17 | 25 | 80 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 51.729 | 215 | 451 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.43E-38 | 216 | 449 | No hit | No description |
CDD | cd08875 | 5.73E-118 | 219 | 447 | No hit | No description |
SMART | SM00234 | 2.0E-46 | 224 | 448 | IPR002913 | START domain |
Pfam | PF01852 | 3.7E-49 | 225 | 448 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.2E-9 | 275 | 430 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.2E-27 | 469 | 700 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MEYGSGSPGD HHHHHDGSSD SQRRKKRYHR HTANQIQRLE SMFKECPHPD EKQRLQLSRE 60 LGLAPRQIKF WFQNRRTQMK AQHERADNCA LRAENDKIRC ENIAIREALK NVICPSCGGP 120 PINEDCYFDE QKLRLENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMGNF 180 GSQGFGGPSL DLDLLPGSSS SAMPNVPPYQ PACLSDMDKS LMSDIASNAM EEMIRLLQTN 240 EPLWMKAADG RDVLDLDNYE RMFPKANSHL KNPNVHVEAS RDSGVVIMNS LTLVDMFMDP 300 NKWMELFPTI VTMARTIEVI SSGMMGGHSG SLQLMYEELQ VLSPLVSTRE FYFLRYCQQI 360 EQGLWAIVDV SYDFPQDNQF APQFRSHRLP SGVFIQDMPN GYSKVTWIEH VEVEDKTPVH 420 RLYRNLIYSG IAFGAQRWLT TLQRMCERIA CLMVTGNSTR DLGGVIPSPE GKRSMMKLAQ 480 RMVTNFCASI SASSGHRWTT LSGMNEIGVR VTVHKSTDPG QPNGVVLSAA TTIWLPIPPQ 540 TVFNFFKDEK KRPQWDVLSN GNAMQEVAHI ANGPHPGNCI SVLRAFNTSQ NNMLFLQESC 600 VDSSGSLVVY CPVDLPAINI AMSGEDPSYI PLLPSGFTIS PDGQGASTST STSRAMGGSG 660 GSLITVAFQI LVSSLPSAKL NMESVATVNS LIGNTVQQIK SALNCPGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15742 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-156 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020221986.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A151T3R8 | 0.0 | A0A151T3R8_CAJCA; Homeobox-leucine zipper protein HDG11 | ||||
STRING | XP_007152598.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |