PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_15584

Common Name

KK1_016033

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

C2H2

Protein Properties

Length: 461aa MW: 50920.9 Da PI: 5.5301

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_15584	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	109	128	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+Cp C+++F++ ++ H C.cajan_15584 109 YECPVCKQPFRSEEEVSAHV 128 99***********9999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	4.44E-20	167	252	No hit	No description
SuperFamily	SSF143503	2.09E-18	170	257	IPR018997	PUB domain
Pfam	PF09409	4.6E-16	174	246	IPR018997	PUB domain
SMART	SM00580	2.4E-18	174	241	IPR018997	PUB domain
SuperFamily	SSF54236	5.68E-13	322	434	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	11.039	350	434	IPR001012	UBX domain
Pfam	PF00789	2.4E-5	350	430	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	3.9E-8	350	434	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MGDMKDKMKG FMKKVNNSFS SSSSGKFKGQ GRVLGSSSSS IPLNSNPTPR PIPTPNPISK 60 PNTSPKPSPR KTEQNRITEE PPKDGAFDPF DSLVTNSNRS QNGYSLNVYE CPVCKQPFRS 120 EEEVSAHVED CLSSPGERGG DDGNGVSETE SEVVCNTELE VCVGTYISGK PSEGSFDVVL 180 KLLRNIAREP ENVKFRKIRM NNPKIKEAVG DVAGGVELLS FVGFELREEN GETCAFMEVP 240 TEDQIKFIKK AIVLLESQLV QEPPKKEDSV SATSAETGAK AEPKPVDRQV KVFFAVPESV 300 AAKIELPDSF YNLSAEEVRR EAELRRKKLA DSQLLIPKSL REKQAKASRK RYSKTIIRIQ 360 FPDGVVLQGV FAPWEPTTAL YEFVSSSLKE PGLEFDLMHP VLVQRRVIPR FPKAGENAKT 420 IEEEDLVPSA LIKFKPLETD SVVFTGLKNE LLEISEPLVN A

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MGDMKDKMKG FMKKVNNSFS SSSSGKFKGQ GRVLGSSSSS IPLNSNPTPR PIPTPNPISK  60
PNTSPKPSPR KTEQNRITEE PPKDGAFDPF DSLVTNSNRS QNGYSLNVYE CPVCKQPFRS  120
EEEVSAHVED CLSSPGERGG DDGNGVSETE SEVVCNTELE VCVGTYISGK PSEGSFDVVL  180
KLLRNIAREP ENVKFRKIRM NNPKIKEAVG DVAGGVELLS FVGFELREEN GETCAFMEVP  240
TEDQIKFIKK AIVLLESQLV QEPPKKEDSV SATSAETGAK AEPKPVDRQV KVFFAVPESV  300
AAKIELPDSF YNLSAEEVRR EAELRRKKLA DSQLLIPKSL REKQAKASRK RYSKTIIRIQ  360
FPDGVVLQGV FAPWEPTTAL YEFVSSSLKE PGLEFDLMHP VLVQRRVIPR FPKAGENAKT  420
IEEEDLVPSA LIKFKPLETD SVVFTGLKNE LLEISEPLVN A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	8e-15	301	434	19	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_15584

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235390	0.0	AC235390.1 Glycine max strain Williams 82 clone GM_WBb0116B02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020221606.1	0.0	plant UBX domain-containing protein 2
Refseq	XP_029128268.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A151T3B8	0.0	A0A151T3B8_CAJCA; UBX domain-containing protein 6
STRING	GLYMA08G04760.6	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]