PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_15312 | ||||||||
Common Name | KK1_015754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | TCP | ||||||||
Protein Properties | Length: 124aa MW: 13656.4 Da PI: 8.8923 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 93.5 | 4.2e-29 | 1 | 73 | 4 | 74 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 kk ++++ h kv+g +R +++++ caa +F++++eLG+++d++tieWLl+qa+p+i+++tg+++++a+++ + C.cajan_15312 1 KKPPSKDHHNKVDGCGRLICMPIICAACVFQVTRELGHKSDGQTIEWLLRQAEPSIIAATGNGTTPATFStvS 73 7999***********************************************************9999666222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 19.057 | 5 | 59 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.4E-23 | 5 | 84 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
KKPPSKDHHN KVDGCGRLIC MPIICAACVF QVTRELGHKS DGQTIEWLLR QAEPSIIAAT 60 GNGTTPATFS TVSAGANEKP LHVSRGECRE WWFDPCHAFE GRRLFQNRDG DAVGRGGARK 120 TNQR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_15312 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536737.1 | 3e-38 | transcription factor TCP7 | ||||
Refseq | XP_027178548.1 | 5e-38 | transcription factor TCP7-like | ||||
Refseq | XP_028184426.1 | 3e-38 | transcription factor TCP7-like | ||||
Swissprot | Q9FTA2 | 3e-37 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A151SZR1 | 8e-88 | A0A151SZR1_CAJCA; Transcription factor TCP21 (Fragment) | ||||
STRING | GLYMA10G43190.1 | 1e-37 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 7e-40 | TCP family protein |
Publications ? help Back to Top | |||
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