PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_15312
Common NameKK1_015754
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family TCP
Protein Properties Length: 124aa    MW: 13656.4 Da    PI: 8.8923
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_15312genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP93.54.2e-29173474
            TCP  4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74
                   kk ++++ h kv+g +R +++++ caa +F++++eLG+++d++tieWLl+qa+p+i+++tg+++++a+++  +
  C.cajan_15312  1 KKPPSKDHHNKVDGCGRLICMPIICAACVFQVTRELGHKSDGQTIEWLLRQAEPSIIAATGNGTTPATFStvS 73
                   7999***********************************************************9999666222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.057559IPR017887Transcription factor TCP subgroup
PfamPF036346.4E-23584IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
KKPPSKDHHN KVDGCGRLIC MPIICAACVF QVTRELGHKS DGQTIEWLLR QAEPSIIAAT  60
GNGTTPATFS TVSAGANEKP LHVSRGECRE WWFDPCHAFE GRRLFQNRDG DAVGRGGARK  120
TNQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_15312
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536737.13e-38transcription factor TCP7
RefseqXP_027178548.15e-38transcription factor TCP7-like
RefseqXP_028184426.13e-38transcription factor TCP7-like
SwissprotQ9FTA23e-37TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A151SZR18e-88A0A151SZR1_CAJCA; Transcription factor TCP21 (Fragment)
STRINGGLYMA10G43190.11e-37(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.17e-40TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]