PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_13788
Common NameKK1_014211
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 457aa    MW: 50267.2 Da    PI: 8.9932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_13788genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-056383323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C+ Cgk F r  nL+ H r H
  C.cajan_13788 63 CETCGKGFQRDQNLQLHRRGH 83
                   *******************88 PP
2zf-C2H213.50.00021137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  C.cajan_13788 137 WKCEKCSKRYAVQSDWKAHSKTC 159
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.97E-76083No hitNo description
Gene3DG3DSA:3.30.160.608.1E-56183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5936183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.97E-7132157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0005634Cellular Componentnucleus
GO:0004526Molecular Functionribonuclease P activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MDEGEITHAF HQNLTASSAA SNNNNPPHHV LKRKRNLPGN PDPEAEVIAL SPKTLMATNR  60
FLCETCGKGF QRDQNLQLHR RGHNLPWKLK QRTGKEAKKR VYVCPEKSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGT IFSRRDSFIT  180
HRAFCDALAE ETARVNAVSD MNTSLGGNIG YNVMGTSLGH NMATHFPSIF KPVSNTDETS  240
NQTSRGLPLW MGQTSSQAQE TMVNSNLREI HHQLGSATSS GTIYGGNSLV QCSNLPPSNN  300
YQLSWVFGTK LSNTSQELTT STTSLPLCNN NTSVPSLYSS QHQPHQTSSN MSATALLQKA  360
AQIGATSSDP SWLGSLGLKC GNSQGQDGNN NKFSGMYGSS FVLSEADNSA CDMSQMHPLK  420
RRHILNEESG GGQTRDFLGV GVQNHLPTFI NQRVDLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-37133202372Zinc finger protein JACKDAW
5b3h_F7e-37133202372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_13788
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352960.0AC235296.1 Glycine max strain Williams 82 clone GM_WBb0059O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224436.10.0zinc finger protein MAGPIE
SwissprotQ9ZWA61e-139IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A151SVH20.0A0A151SVH2_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA12G13810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-134C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]