PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | C.cajan_13548 | ||||||||
Common Name | KK1_013964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
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Family | Dof | ||||||||
Protein Properties | Length: 272aa MW: 29758.2 Da PI: 10.0327 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.5 | 1.4e-38 | 65 | 124 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ C.cajan_13548 65 EGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 124 5679*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-28 | 51 | 117 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.1E-33 | 67 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MVFSSIPVYL DPPNWQHQQQ QNQHQQQANG SNNPQLLPQP QAPSIEAGPI RPGSIADRTK 60 VPAQEGALKC PRCESTNTKF CYFNNYSLSQ PRHFCKTCRR YWTRGGALRN VPVGGGCRRN 120 KKNKRSRSKS PVSTQKPSLP NPPSAIPELI GNAGVGLREI QAQNMGFQIG GHGNGTGLST 180 AATTSGGGLD QWRFQQFPFL NGFESTSTVS YPFQSESVEG LVGVGDIAAN LRVTQPRVKL 240 EYNGGLNLSR SPLSVSENTN HYYSWSDLSH MG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | C.cajan_13548 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 8e-96 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020224060.1 | 0.0 | dof zinc finger protein DOF3.6 | ||||
Swissprot | Q9M2U1 | 3e-51 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A151SUS5 | 0.0 | A0A151SUS5_CAJCA; Dof zinc finger protein DOF3.6 | ||||
STRING | GLYMA15G04430.1 | 1e-138 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 5e-38 | DNA binding with one finger 2.4 |